Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0116 ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCAACTGGAGGCAAGAAGAAGGCGTGGAGAAAGAAGAGAAAGTATGAGCTTGGGCGCCAATCAGCAAACACCAAGTTGTCAAGCAACAAGACAATCCGGAGGATTCGCGTTAGAGGTGGTAATGTAAAATGGAGGGCACTGAGGTTGGATACTGGAAATTACTCATGGGGTAGTGAAGCAGTAACCCGTAAGACTCGTATTCTTGATGTTGTCTACAATGCCTCAAACAATGAGCTTGTGAGAACCCAGACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGACATTGGCAGAAAAAAGAAAGCAGCAACCAAGAAGGACTCTACGGAGGAGGGTGATGCTGCTGCTGAAGAAACTAAGAAAAGTAACCATGTTCAGAGAAAAATTGAGAAGCGCCAGAAAGATCGCAAACTTGATGCTCACATTGAAGAGCAATTTGGTGGTGGCAGATTGTTGGCATGTATTTCATCTCGCCCTGGACAATGTGGCCGGGCCGACGGGTACATTCTGGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAACTCCAGAAAAAGAAGGGAAAGGGTGCGGCTTAA 654 0.4633 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAATKKDSTEEGDAAAEETKKSNHVQRKIEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0116 217 Gene3D - 160 212 - -
Vra4g0116 217 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vra4g0116 217 MobiDBLite consensus disorder prediction 1 26 - -
Vra4g0116 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vra4g0116 217 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Vra4g0116 217 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vra4g0116 217 MobiDBLite consensus disorder prediction 11 26 - -
Vra4g0116 217 Gene3D - 32 159 - -
Vra4g0116 217 CDD Ribosomal_S8e_like 5 196 - -
Vra4g0116 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 - -
Vra4g0116 217 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0116 Vra-Chr4 3215048 3217473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0116 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.981 1.60e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0116 K02995 - gmx:100500112 393.275