Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0114 ATGGAAAACCAGTTCTTCCTCAATGCTCCTCAGCTCCATTTTGACCCTTCACCACCTCCTTGTCCACCTTCTTGGCATTCACTCTCTTCTCCCATGGATGTTCAAGTTTTGAATTGCTCAACTCAGAGGACACATGATTCCTTTTACACACCGCCATGGGAGGACAAGTCAACGGATCATGCTGTTCAGTTTGATTCTGCACTCAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAACTGATAATTTTGTCATCAGGGAGTTGATTGGCAAATTGGGAAACATTGGTGCTGGTGGCTCTGATGAGATCTCACCTCATTCTCAGCCTTTGCTTCCTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCCAAGCTGAGCTTGAACAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGCATGCCCCCCAGTTTGAATTCCAGTGTGGCAGAATTCTCAACTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAGCAATGCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCCAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGAGTGCCCAGGAGAACAAGAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCGGAACAAATTCCAAATGGGGACAATGGGATGAAACCTTCCCCATATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCACCAACCCCCCTATGGCTGCTGAAGCCAGTGAAGATTCAAATGCAAAGCGCAGCAAGGCTAACGAAGGTGAGGGCAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACCAGTAATACAAATGATGACAAACAGAACAAGAGTAACTCAAAACCTCCAGAGCCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCACAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTGACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCCATGAAGTTGGCTTCTGTTAACACCAAGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAACAAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGTGGACCCATTGGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTATCTCACCTAAATGCCTTTAATGAAGGTGCCTCTCAGTATCCAATAGCATTCTCTGAAGGTGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAGTACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1686 0.4502 MENQFFLNAPQLHFDPSPPPCPPSWHSLSSPMDVQVLNCSTQRTHDSFYTPPWEDKSTDHAVQFDSALSSMVSSPAASNSNMSTDNFVIRELIGKLGNIGAGGSDEISPHSQPLLPASSYINGNNSTNTSCYSTPLSSPPKLSLNKIPTMMNHLVKEGMPPSLNSSVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLGPSNAELTHRSSPLVENGKLPRVSSSPSLKVLGSQMSAQENKNSPLQDQMEVANSQEESTISEQIPNGDNGMKPSPYANSRKRKGPSKGKAKETSTPTNPPMAAEASEDSNAKRSKANEGEGNENGQVKAEEESKGVTSNTNDDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTKLDFSIESLISKDIFQSNNSLAQPIFPLDSSAPAFYGQHPQQNPAIHSNIPNGTVSHTSVDPLDTGLCQNLGMQLSHLNAFNEGASQYPIAFSEGDLHTIVQMGFGQTANRKTPVQSQSFNGSNQVPL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0114 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Vra4g0114 561 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 558 IPR024097 GO:0006355
Vra4g0114 561 CDD bHLH_AtBPE_like 357 442 - -
Vra4g0114 561 PANTHER BHLH TRANSCRIPTION FACTOR 2 558 - -
Vra4g0114 561 Coils Coil 414 434 - -
Vra4g0114 561 MobiDBLite consensus disorder prediction 196 358 - -
Vra4g0114 561 MobiDBLite consensus disorder prediction 216 267 - -
Vra4g0114 561 MobiDBLite consensus disorder prediction 307 337 - -
Vra4g0114 561 MobiDBLite consensus disorder prediction 289 303 - -
Vra4g0114 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 435 IPR036638 GO:0046983
Vra4g0114 561 SMART finulus 373 423 IPR011598 GO:0046983
Vra4g0114 561 Pfam Helix-loop-helix DNA-binding domain 371 418 IPR011598 GO:0046983
Vra4g0114 561 Gene3D - 364 439 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0114 Vra-Chr4 3155612 3158558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0114 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.052 1.10e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0114 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0114 - - gmx:100812081 872.848