Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0104 ATGGCTAAGCCAGGGGTGGTTGAATCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAGCTTCAGAGGTTGGTGAAGTCCATTGTAGATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCAAAAGAGACTCTTTGTGTTCTCAAGGAGTTGAAACTCAGAAGGAGGTCTTCACTGTCTTTGAAGCTGCACAACAGGAATGTGTCATCTTGCCCTGATGAATTCAAGTGTCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAAGTGCTGGAAACAGGACTTGTCCTCGAACGCATCAAGTTCTTTCACACACTGTTCTCACACCAAATCATCTAATAAGGGAAATGATAGAACAGTGGTCAAAAAACCAAGGTGTTGAATTGTCGAATACTGTTCAATACATCGATGAGGAAGGTTTAAACCAAGCAGACAGAGAGATTTTTGTCCGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACGGCTGCAAAAGAACTGCGCATGTTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTCTGCGATTCTGCAGATGCGATTCCCCAATTGCTGAAGCCAATTTGTGGGAGTGATTCTTTCAGCAGTGTTCAACCTGATCTCCAAGAAGACGTGATCACAACACTCCTCAATATCTCTATTCATGACAACAACAAAAAGCGAGTGGCTGAAACACCAATGGTGATTCCTCTCCTTATGAGAGCATTGAGAAGTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTTTTCACCTTGTCAGCTCTTGACTCAAACAAGGAAATCATAGGGAAATCAGGAGCCTTAAAGCCATTGATCGATCTCTTAGAAGAAGGGCATCCCTTAGCAATGAAGGATGTTGCTTCAGCAATATTTAACATATGTGTGATGCATGAGAACAAGGCAAGAGCAGTGAAGGAGGGTGCAGTGAGAGTGATTTTGACAAAGATAAAGAATGAGGTTCATGTTGATGAATTACTAGCGATCCTTGCACTGCTTTCAAGTCATCAGAGGGCTGTTAATGAGATGGGAGATGTTGGAGCAGTGGGTAGCTTGCTGAGAATTATCAGAGAGAGCTCATGTGAACGGAACAAAGAGAATTGTGTGGCAATTCTTCAAACAATTTGTTTGCATGACAGATCAAAGTTGAAGGAAATAAGAGAAGAAGAGAACAGTCACAAAACAATCTCTGAGCTAGCACAGAGTGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATATCACACACACTGCATAA 1383 0.4244 MAKPGVVESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRRRSSLSLKLHNRNVSSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLSAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGVELSNTVQYIDEEGLNQADREIFVRLLKKMSSTLSDQKTAAKELRMLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFSSVQPDLQEDVITTLLNISIHDNNKKRVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKEIIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKEGAVRVILTKIKNEVHVDELLAILALLSSHQRAVNEMGDVGAVGSLLRIIRESSCERNKENCVAILQTICLHDRSKLKEIREEENSHKTISELAQSGTSRAKRKASGILERLNRVVNITHTA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0104 460 SUPERFAMILY ARM repeat 168 450 IPR016024 -
Vra4g0104 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vra4g0104 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Vra4g0104 460 SUPERFAMILY RING/U-box 70 150 - -
Vra4g0104 460 Pfam U-box domain 77 145 IPR003613 GO:0004842|GO:0016567
Vra4g0104 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vra4g0104 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 458 - -
Vra4g0104 460 Gene3D - 147 455 IPR011989 -
Vra4g0104 460 SMART arm_5 246 287 IPR000225 GO:0005515
Vra4g0104 460 SMART arm_5 288 328 IPR000225 GO:0005515
Vra4g0104 460 CDD RING-Ubox_PUB 80 122 IPR045210 -
Vra4g0104 460 PANTHER U BOX DOMAIN-CONTAINING 5 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0104 Vra-Chr4 2915858 2919409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0104 138 460 U-box Gene Family AT3G07360 59.940 8.80e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0104 - - gmx:100809408 810.831