Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0103 ATGTCTCAGAGGGAAAAGGAACCAACAATGCCTCCAAAAGTCCAGGATTTTTTGTCTGTGGCAAAACAAGCGGAGCAACTTCGAAAGGACGGCAACAATTACTTCAAGAAACAGCGTTTTGGAGCTGCCATTGATGCTTATACTGAGGCGATTGCACTGTGCCCCGATGTTCCGGTCTATTGGACCAACCGTGCTCTCTGTCATCTCAAGCGCAGTAATTGGACCAGAGTAGAGGAAGACTCTCGTGAAGCTATCAAGCTTGACAGCAATTTGGTTAAGGCCCACTATATGTTAGGTCTTGCATTGGTAGAGAGACAAGAGTTTGCTAAAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCAAGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATGTTAAGCGATCATGGGAACTACAGAGCTTGAAAGAAGCTTGTGAGGATGCTCTAAAGGAAAAACATTTTCTCGAAGTCCCCCACACGGAAGGATCTGTAGAAGATGATACTACCCATTTAGAACAGTTAGAGGCTTTAGGAAAAGTGTTTGATAAAGTTGCAGAACAAGACATGCCTACTGAGGTGCCAGATTATCTGTGCTGTAGAATCTCACTTGATATTTTCTGTGATCCTGTGATTACCCCAAGTGGACTTACATACGAGAAGACAGTGATTATTGACCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTGACTCGAGAACCTCTTGATCCATCACAGCTAATACCAAACCTAGCAATAAAGCAAGCAGTTGAGGCATTCTTGGATAAACATGGGTGGGCATACAAAGATATATTAACAAAAAGCTTTTAA 888 0.4257 MSQREKEPTMPPKVQDFLSVAKQAEQLRKDGNNYFKKQRFGAAIDAYTEAIALCPDVPVYWTNRALCHLKRSNWTRVEEDSREAIKLDSNLVKAHYMLGLALVERQEFAKGILELKKALDLDRGSHPKGQMVEEIWQELAKAKYLEWEHSYVKRSWELQSLKEACEDALKEKHFLEVPHTEGSVEDDTTHLEQLEALGKVFDKVAEQDMPTEVPDYLCCRISLDIFCDPVITPSGLTYEKTVIIDHLEKVGKFDPVTREPLDPSQLIPNLAIKQAVEAFLDKHGWAYKDILTKSF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0103 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 289 IPR013083 -
Vra4g0103 295 PANTHER OS08G0113300 PROTEIN 18 289 - -
Vra4g0103 295 ProSiteProfiles TPR repeat profile. 24 57 IPR019734 GO:0005515
Vra4g0103 295 Gene3D Tetratricopeptide repeat domain 18 176 IPR011990 GO:0005515
Vra4g0103 295 SUPERFAMILY RING/U-box 207 289 - -
Vra4g0103 295 Pfam U-box domain 213 285 IPR003613 GO:0004842|GO:0016567
Vra4g0103 295 SMART Ubox_2 216 279 IPR003613 GO:0004842|GO:0016567
Vra4g0103 295 SUPERFAMILY TPR-like 23 143 IPR011990 GO:0005515
Vra4g0103 295 CDD RING-Ubox_CHIP 213 279 IPR045202 -
Vra4g0103 295 ProSiteProfiles U-box domain profile. 212 286 IPR003613 GO:0004842|GO:0016567
Vra4g0103 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 18 289 IPR045200 GO:0000209|GO:0061630
Vra4g0103 295 SMART tpr_5 92 125 IPR019734 GO:0005515
Vra4g0103 295 SMART tpr_5 24 57 IPR019734 GO:0005515
Vra4g0103 295 SMART tpr_5 58 91 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0103 Vra-Chr4 2907345 2910325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0103 24 288 U-box Gene Family AT3G07370 65.414 3.45e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0103 K09561 - gmx:100796519 435.261