Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0098 ATGTACTCCGGTGACAGCGACAGCAGCAGCGATAGCGGAGAGCGGGTCCGACGCGGGGAGACCCTGGACTTCCAGAACCTGAATGTGGTGTCGGCAGTGGGACGCGGCGCGAAGGGCGTGGTGTTCCTGGCGCGGGTGATGGAGAAGGGAAACGGAGACTGGTTGGCGCTGAAGGTGGTGTCGAAGGAGCTGCTGAGGAAGAAGAACAGGAACAAGGGAAGCTGCAAGAGGGTGTCGTTCGAGAGGCACATACTACGTCGTTTCGATCACCCGCTATTGCCCAGGTTCCGAGGCGCTCTCGACACCGACCAACTCACCGGTTTCGCAATCGATTATTGCCACGGCGGAAACCTCCATTTGCTTCGGAAGAAGCAACCGGAGAAGACCTTCTCCGAAGAAACCGTAAGGTTTTATGCAGTAGAATTGGTTCTAGTGTTGGAGTATTTGCACAACTTTGGAGTAGTTTATAGAGATTTAAAGCCAGAGAATATCATGATCCAAGAATCTGGTCACATAATGTTGGTGGATTTTGACCTTTCCAAGAAGTTATACCTTCGCTCAACTCCCTCGTCGAGTTGCAACTCATCACCGGGTTCTGACTCGTCACCGGAGAAGGATCGGAGGAAGCGACGACCATCACGATTCAGCTGTTACTGCCATTCAGGGATATCCTTGTACGACTCAGATATTCCGAATCAACTCAACGCCATCCCAACGAGTCGCAGCATGTCAGACTCAGTGGAAAAGTCGAATTCTTTTGTCGGAACGGAAGAGTACGTGGCACCGGAGGTCATCTCCGGAGAAGGACACGACTTCGCCGTTGATTGGTGGTCATTGGGCATTGTTCTGCACGAGTTGATCTACGGAACGACGCCGTTTAAGGGCGCGAACAGGAAAGAAACGTTTCATCGTATAATAACGAAGGAACCCGAATTATCAGGTGCAACAACGCCTTTGAGGGACTTGATTAAAAAGTTGCTTGAGAAGGATCCTGAGCGTAGGATCCAGGTGAAAGATATCAAGAGCCACGATTTCTTCAAAGGCGTGAAGTGGGACACGATCTTGGAAATCTCACGTCCACCGTATATTCCTCAAAATGAGATAAAGGATTCAACAGGGTTTTCTCAGAAGGATGTTGAATCGTTTGTTCATAGAATATTTTTTCCCAAGAGTAAAGAGGAGGAAGATAAAACAAATAAAAGGGAGGCAAAAAATAATGAAAAGGAAAATTATGAAAATGAGGAAAACGATAAAAAGGAGGAAAGTAATAAAAATGTGTGGGTTGACATGTTAAATCAAAATTCTGCTAAGGATGAAAATTTTTTAATTTTTTGA 1335 0.4704 MYSGDSDSSSDSGERVRRGETLDFQNLNVVSAVGRGAKGVVFLARVMEKGNGDWLALKVVSKELLRKKNRNKGSCKRVSFERHILRRFDHPLLPRFRGALDTDQLTGFAIDYCHGGNLHLLRKKQPEKTFSEETVRFYAVELVLVLEYLHNFGVVYRDLKPENIMIQESGHIMLVDFDLSKKLYLRSTPSSSCNSSPGSDSSPEKDRRKRRPSRFSCYCHSGISLYDSDIPNQLNAIPTSRSMSDSVEKSNSFVGTEEYVAPEVISGEGHDFAVDWWSLGIVLHELIYGTTPFKGANRKETFHRIITKEPELSGATTPLRDLIKKLLEKDPERRIQVKDIKSHDFFKGVKWDTILEISRPPYIPQNEIKDSTGFSQKDVESFVHRIFFPKSKEEEDKTNKREAKNNEKENYENEENDKKEESNKNVWVDMLNQNSAKDENFLIF* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0098 444 Gene3D Phosphorylase Kinase; domain 1 366 375 - -
Vra4g0098 444 Gene3D Transferase(Phosphotransferase) domain 1 117 193 - -
Vra4g0098 444 Gene3D Phosphorylase Kinase; domain 1 27 116 - -
Vra4g0098 444 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 1 410 - -
Vra4g0098 444 MobiDBLite consensus disorder prediction 393 425 - -
Vra4g0098 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vra4g0098 444 Pfam Protein kinase domain 246 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0098 444 Pfam Protein kinase domain 29 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0098 444 MobiDBLite consensus disorder prediction 187 209 - -
Vra4g0098 444 ProSiteProfiles AGC-kinase C-terminal domain profile. 347 444 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra4g0098 444 SMART serkin_6 27 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0098 444 ProSiteProfiles Protein kinase domain profile. 27 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0098 444 PANTHER FLIPPASE KINASE 1-RELATED 1 410 - -
Vra4g0098 444 SUPERFAMILY Protein kinase-like (PK-like) 26 378 IPR011009 -
Vra4g0098 444 Gene3D Transferase(Phosphotransferase) domain 1 247 365 - -
Vra4g0098 444 Coils Coil 390 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0098 Vra-Chr4 2816264 2818027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0098 17 444 AGC Kinase Gene Family AT3G25250 51.716 3.34e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra4g0098 Pkinase 2.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0098 K20714 - gmx:100813693 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0098 4 2816264 2818027 Vra4g0098 4 2816264 2818027 ECH