Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0097 ATGGCGGTTCCCTTGCTAAACAAGAAAGTTGTGAAGAAGCGTGTCAAGAAGTTTAAGAGGCCTCAAAGTGACCGCAAAATTTCCGTGAAGCCCAGCTGGCGCAGGCCAAAGGGTATTGATTCACGTGTGAGGAGAAAGTTCAAAGGATGTGTTTTGATGCCAAACATTGGTTATGCTTCAGACAAGAAGACCCGTCACTATCTGCCTAATGGATTCAAGAAGTTTGTTGTCCACAATGTCAAGGATCTTGAACTTCTGATGATGCACAACAGGACATACTGTGCTGAGATAGCACACAATGTGTCAACCAGGAAGAGAAAGGAGATTGTAGAACGTGCTGCACAGTTGGATGTTGTTGTTACCAACAAACTTGCCAGGTTGCGCAGCCAAGAAGATGAGTGA 402 0.4502 MAVPLLNKKVVKKRVKKFKRPQSDRKISVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYASDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0097 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vra4g0097 133 PANTHER 60S RIBOSOMAL PROTEIN L32-1-LIKE 1 133 - -
Vra4g0097 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vra4g0097 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vra4g0097 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vra4g0097 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0097 Vra-Chr4 2798931 2800589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0097 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 86.466 1.21e-84 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0097 K02912 - nnu:104586297 248.054