Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0083 ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAGTTTAAAGGTTATGTATTCAAAATTACTGGAGGCTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGGGTTCGCCTGCTTCTTCATAGGGGAACTCCATGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCTGACCTATCTGTGCTTAACTTGGTAATTGTGAAGAAGGGTGAAAATGACTTGCCAGGATTGACTGACGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCCTCAAAAATCCGGAAACTGTTCAACCTTTCTAAAGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGGACATTTACAACAAAAGCAGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAAAGACTAGTCACTCCTCTTACTCTCCAAAGGAAGAGGGCACGGATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAAGCAGCCGAGTACCAGAAACTCCTCGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCCAAGAGGAGGTCCAAGCTTTCCAGTGCTACCAAGGCAGCTGTATAG 744 0.4785 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSATKAAV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0083 247 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vra4g0083 247 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra4g0083 247 Gene3D - 133 234 - -
Vra4g0083 247 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vra4g0083 247 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra4g0083 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 - -
Vra4g0083 247 MobiDBLite consensus disorder prediction 219 247 - -
Vra4g0083 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra4g0083 247 Coils Coil 189 216 - -
Vra4g0083 247 MobiDBLite consensus disorder prediction 219 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0083 Vra-Chr4 2439258 2441839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0083 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.554 2.14e-120 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0083 K02991 - gmx:547746 442.58