Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0071 ATGGCTTCTTTGAGATCTTCTTCTTCGTTCTGGTGCTACCGATGCAACCGCGTCGTTAGGGTTTCCCTCGCCGCAGAAGCGCAGCGAGATCCTACCATTCTCTGCCCCGATTGTCACTCCGGTTTTCTCGAAGAGGTACACACGCCTCCCCACTCGCGTCGATCCACACGCGCCGGCTCGCCCTTCAATCCCGTGATCATGCTGCGCGGCGGGAACGGGAACGAAAACGCAGGCGCCAACGAAACCGAAAATGATGTCGCCTCGGGGAACTTCGAGCTTTACTACAACGACGTCGTTTCGGGTCCGGGCCCCAGCGGTCTGCGCCCGCTTCCCGCGGGCGTCACCGACTTCCTCATCGGCTCGTCGGGCTTCGATCACTTGCTGGATCAGCTGGACGTCACCTCGGTAGGCCTTGACCGGGCAGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCCAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAACTTTCAAGTGGATTGCGACGCACGTGAAATGCCGTGCGGGCACGTGTATCACTCGGAGTGCATCGTGCCGTGGCTGTCTGTGCGGAACTCGTGCCCCGTATGCCGCCGCGTGGTTCCTTCAGATGAAGTTGATGATAACAATACGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCCGGCTCATCGGTGGTAGAGAACTGCCCCTCGTGTACACGGAAATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCCAGGAGAGTCTCCTGGGATTCTTCTATTGGTAGGTCTAGGGAGAGTAGGGGCTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATTTTGGAAGAGTTAGAAGTTCCTTTTCTCGTGGAACGAGAAACTCTCGTCTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 984 0.5722 MASLRSSSSFWCYRCNRVVRVSLAAEAQRDPTILCPDCHSGFLEEVHTPPHSRRSTRAGSPFNPVIMLRGGNGNENAGANETENDVASGNFELYYNDVVSGPGPSGLRPLPAGVTDFLIGSSGFDHLLDQLDVTSVGLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVDDNNTMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNSRLNGRSRSATTIFSRFRSRSRF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0071 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 8 276 - -
Vra4g0071 327 Pfam Ring finger domain 165 207 IPR001841 -
Vra4g0071 327 Pfam Protein of unknown function (DUF1117) 221 321 IPR010543 -
Vra4g0071 327 Pfam zinc-ribbon 9 45 IPR039525 GO:0061630
Vra4g0071 327 SUPERFAMILY RING/U-box 146 213 - -
Vra4g0071 327 SMART ring_2 166 206 IPR001841 -
Vra4g0071 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 213 IPR013083 -
Vra4g0071 327 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Vra4g0071 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0071 Vra-Chr4 2117357 2121037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0071 97 216 C3H Transcription Factor Family AT5G01980 38.525 9.76e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0071 - - gmx:121172634 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0071 4 2117357 2121037 Vra4g0071 4 2117357 2121037 ECH