Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0065 ATGCAAAGGGGTAAGGTGAAGCTAGATGAGGATCTACGTCCTGATCGTGAGGATGATTTCCAAACAGATGATGAAGAAAATCAGGCACAAAGGGTGTTTGAACATTTGGATGATGATACTGATTCAGATAATTCACCTCCTTCACCAAGTTTGTCAAACGATGTTTCCATTATCTCTTGGCCTCAAAGCTATAGACAATCTATGGACATGTTAACTAGTGCAACACCTCCTGGAATTAATTTGTTAAAGAGATTTGGTTCAGTAGGGAGAGGAAATTCTCCCATTACATCATTCAAGAGATCTCAAGAACACCAAGAGGATTCTACCTTATCTCTACCCCTTGTTTCTGACACATGTGGATTCAAACAAGAGAATCGTCTTGCATCAGCACCGCGCCTGCAACCACTTAGCAGTGCAAAATTTTCTGTGGACGAATTGCCACCGCCACATGAACAATGTTCATATACAAAATCAGTAATTAATGGAACCAATATACTATGTGGAATAGGACTTCTTACCACTCCATATGCAATAAAAGAAGGAGGGTTTCTGAGCCTTGCAATACTTTTAATGTTTGCTATCATGTGTTGTTATACTGGGATGCTACTAATAAAATGTTTAGAAAGCAATGATGGACTCAAAACCTACCCAGATATTGGCCAAGCTGCTTTTGGAATTGTTGGTCGCTTGGGGATTGCAATCTTTCTATACGTGGAACTTTTTGCTTCTTGTGTTGAGTATATAATACTAGTCAGTGATAACCTCTCCTCACTATATCCTAACACCCAGATGAAATTTGGTGGGATTGATTTGAATTCTGAAGAAATTTATGCCATCACAGCAGCAATTATTGTTCTACCAACAGTTTGGTTGCGAAATCTAAGCTTACTTTCTTATATTTCAGTTGGAGGAATATTTGCAACAATACTCGTTGCTCTTTGTTTGTTTTGGGTTGGGACAATGGACCAGGTTGTTGGATATAAGCCAGGAAAAAAAATTTTAGACTTGGCAAGCTTACCTGTCTCAGTTGGTCTCTATAGTTTTTGCTTTGCTGGCCATGCTGTTTTTCCTAACATCTACTCTTCTATGAAGGAACCATCCAAATTCCCATCAGTGTTATTTGTCTGCTTTGGCTTTTGCACTTTCATGTACATGAGTGTGGGAATAATGGGTTACTTAACATTTGGTGACTTAGTTTCATCTCAGTTTACCTTAAACATGCCTAAAGAATTATATGCATCGGAGATTGCAACTTGGACAACGGTTGTGACTCCATTGGCAAAATATGCCTTAACGTTATTGCCGATTGCATTGAGCATAGAGGAACTAGCCACCTCTCCAAGACTAAGATGCCATGCTATGTCCGTTCTTGTCAGAACAACTTTAGTGATTTTAAGCTTACTTGTTGCTCTCTATATTCCATATTTTGGTTCTTTGATGGCACTAATTGGTTCTTTCTTGTCAATACTAGTTGCACTTATTTATCCATGTGCATGTTTCCTCAAGTTACATAGAGGGAGATTATCAAATGCGGAGATAACAATTTGTGGTATTATAATTGTTGTTGGGCTAATATCCGCTTGTATGGGAACATTGTCAGCTGTTTCAAAAATAACTGGGGAAGGGGACTGA 1632 0.3866 MQRGKVKLDEDLRPDREDDFQTDDEENQAQRVFEHLDDDTDSDNSPPSPSLSNDVSIISWPQSYRQSMDMLTSATPPGINLLKRFGSVGRGNSPITSFKRSQEHQEDSTLSLPLVSDTCGFKQENRLASAPRLQPLSSAKFSVDELPPPHEQCSYTKSVINGTNILCGIGLLTTPYAIKEGGFLSLAILLMFAIMCCYTGMLLIKCLESNDGLKTYPDIGQAAFGIVGRLGIAIFLYVELFASCVEYIILVSDNLSSLYPNTQMKFGGIDLNSEEIYAITAAIIVLPTVWLRNLSLLSYISVGGIFATILVALCLFWVGTMDQVVGYKPGKKILDLASLPVSVGLYSFCFAGHAVFPNIYSSMKEPSKFPSVLFVCFGFCTFMYMSVGIMGYLTFGDLVSSQFTLNMPKELYASEIATWTTVVTPLAKYALTLLPIALSIEELATSPRLRCHAMSVLVRTTLVILSLLVALYIPYFGSLMALIGSFLSILVALIYPCACFLKLHRGRLSNAEITICGIIIVVGLISACMGTLSAVSKITGEGD* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0065 543 Pfam Transmembrane amino acid transporter protein 153 532 IPR013057 -
Vra4g0065 543 PANTHER AMINO ACID TRANSPORTER AVT1D 49 538 - -
Vra4g0065 543 PANTHER OS05G0424000 PROTEIN-RELATED 49 538 - -
Vra4g0065 543 MobiDBLite consensus disorder prediction 1 15 - -
Vra4g0065 543 MobiDBLite consensus disorder prediction 1 55 - -
Vra4g0065 543 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0065 Vra-Chr4 2002557 2006334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0065 6 541 Amino Acid or Auxin Permease AAAP Family AT5G02180 48.913 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0065 K15015 - qsu:112025453 583.948