Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0057 ATGGCGGAAACCGACCCTTCCTGGGTGCTCCGCAACCTCACCCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTCAAGCCCATCATCAGGACTCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTCGAGTTGACTGGTGCCGTTTCCTTCCACGCACTTCAGGAGGCGCTATTCAAGGCCAGGGATTTGCTCCAATTTGCCACCACTGCAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAGCACAGGTTCACAGATGTTGCTGTTCGTTTTGAACATGCTATGAGCAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACTGTGTCTTCAGCTTTATGAACAACTTTTGTCTGTTTACAAAGAGAGCTATGATGTGAACACTCAAACTGCTGAACTACGTTCAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGGAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATTGTGTCACCNAGTGAGGATATATCTCGACATACTGATGAGTCATATGTGAAATCNTGTANGCAATCANTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCTACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCTAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCGGATGGATCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATAGAATGCTGATTGCTGAAGCTGGTGCTATACCTCGCCTTGTTGATCTCCTCTACACATCTGATGCTGGCATCCAGGAGCATGCAGTTACTGCTCTTCTGAACNTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGNTTCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTGCGGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGNAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTANAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATTGAAATGCTAATAGAACCTGATGGGGCAATGCGGGACGAAGCATTGGCAATAATGGCTATAGTAGCTAGTCATCCCGATGGAAAAGCAGCAATTGGATCTTCGAATGTTGTATCCACTTTGGTGGAACTAGTCGGCAATGGATCTCCCAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAATTTGTCAATTATCAATTCGCCTAGGGTGATCAATATTCTCTTGGACTTGACAGAAAATGGTTCAGAAAGGGCCAGGCGGAAAGCTGGACAGCTTCTTGAGTTAATAGGAAATCATTGTGAACAACATTCTATGAAAACTTCTAACTAG 1890 0.4434 MAETDPSWVLRNLTRVSTQISYLSSFKPIIRTQCCDLARRIRFLAPLFLELHDNVELTGAVSFHALQEALFKARDLLQFATTASQVFMILDREQVKHRFTDVAVRFEHAMSKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPLCLQLYEQLLSVYKESYDVNTQTAELRSICEKLQFINVDDVKQESLALEKMGGERWDHSQKRIQDMSLVVLKKIQDFLMVESGNIIVSPSEDISRHTDESYVKSCXQSXVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSRGEVRLLAKQNSQNRMLIAEAGAIPRLVDLLYTSDAGIQEHAVTALLNXSIYADNKERIMXSEAVPGILHVLENGSMAARENAAATFFSLSAVDENRVAIGASXAIQALVTLFCEGSXRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIVASHPDGKAAIGSSNVVSTLVELVGNGSPRNKENATSVLVLLCHGDPLNLSIINSPRVINILLDLTENGSERARRKAGQLLELIGNHCEQHSMKTSN* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0057 629 Gene3D - 344 482 IPR011989 -
Vra4g0057 629 SUPERFAMILY RING/U-box 255 331 - -
Vra4g0057 629 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vra4g0057 629 Gene3D - 16 116 IPR036537 GO:0007166
Vra4g0057 629 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vra4g0057 629 Gene3D - 483 628 IPR011989 -
Vra4g0057 629 CDD RING-Ubox_PUB 259 301 IPR045210 -
Vra4g0057 629 Pfam Armadillo/beta-catenin-like repeat 372 409 IPR000225 GO:0005515
Vra4g0057 629 PANTHER U BOX DOMAIN-CONTAINING 7 616 - -
Vra4g0057 629 SUPERFAMILY ARM repeat 365 617 IPR016024 -
Vra4g0057 629 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 616 - -
Vra4g0057 629 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vra4g0057 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515
Vra4g0057 629 SMART arm_5 372 412 IPR000225 GO:0005515
Vra4g0057 629 SMART arm_5 454 494 IPR000225 GO:0005515
Vra4g0057 629 SMART arm_5 536 576 IPR000225 GO:0005515
Vra4g0057 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0057 Vra-Chr4 1830967 1842235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0057 3 623 U-box Gene Family AT3G46510 46.845 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0057 - - var:108326899 1165.21