Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0051 ATGTTTTTCAAGGTTGTAACAATGGTGTTTGTGCTGGCAACAACAGTGGCTGGTGAAGATTCCGTGAGTTTCGCCTATAATGGGTTCCGGTCATCACCTCATTTGTATCTTGACGGCGGTGCTGAGTTCACCTCCGGTGGCATGCTTAAACTCACCAACCACACCAGGCAACAAAAGGGTCATGCTTTCTTCCCAAGTCCAATAGACTTCAAGAACACCTCAAATGGAAGTGCGTCTTCTTTCTCCACCTCCTTTGTGTTTGCCATAAGTTCTGAGTATCCGAATTTGAGTGGTCATGGGATTGTTTTTGTGGTCTCTCCAACAAAAGGGCTTCCAAATTCTCTGCCAAGCCAGTACCTTGGCCTGTTTGATGACATCAATAATGGCAACACCAGCAACCATGTTTTTGGAGTGGAGCTTGATACCATTCAGAACACTGAATTTGGTGATATCAATGACAACCATGTTGGAATTGATGTCAACGAATTGAAGTCCGTTAAGTCAGCCCCTGCAGGATATTACAGTGACGGGGAGGTTAAGAATTTGAGTCTCATCAGTGGCTACCCAATGCAGTTATGGGTGGAATATGATGGCTTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATAAACATCGGCAAACCAGAAAGGCCTTTGTTATCTTTAAGCAAAGATCTTTCTACAATTCTTAACAATAGCATGTACGTTGGATTCTCATCCTCAACTGGGTCAATTCAAAGTTATCATTATATTTTGGGTTGGAGCTTTAAGGTGAATGGCGAGGCTCAGCAACTTGACATCTCTGAACTCCCCAAACTACCTAGACGAGGCAGTAAAGAACGGTCTAAGGTTCTTATTATTGTTTTGCCAATCATCATATCACTCAGTTTGGTGATCGTGGGGGTGACTCTTGCAGTTGTTCATGTCATGAAAAGGAAGAAGTTCACGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAAGCGGTGGATTTGGCAGAGTGTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAAAAGGTGTCCCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATTGTTAGCATTGGGCGTCTTAGGCACAGGAATTTGGTTCCCCTTCTGGGGTACTGCAGGCGCAAAGGAGAGTTGCTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTATAACAAACCAAGAGTGACCCTAAATTGGAGCCAAAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGCTTTATCTACATGAGGAATGGGAGCAAGTTGTGGTCCACAGAGACATTAAGGCTAGTAATGTGCTACTTGATGCCCAATTGAATGGTAGATTAGGGGACTTTGGTCTTTCAAGGTTGTATGAGCATGGAAGTGACCCTCACACTACTCACGTGGTTGGAACACTTGGGTACCTAGCACCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCTGATGTGTTTGCTTTTGGTGCATTTATGCTAGAGGTTGTTTGTGGAAGAAGGCCAATAGAGCAAGTGGGATGTTCTGGGAGTGAAATTCTGGTTGATTGGGTGTATAATTGTTGGAAGAGAGGTGAGATTCTTGAGGCAAGGGATCCAAATTTGGGCACAAATTATAAGACAGAGGAGGTGGAGTTGGTTCTCAAACTAGCTTTGTTGTGCTCACATTCAGATCCTTCAGCTAGACCAAGCATGCGCCAAGTTGTTCAGTACTTGGAGAGGGATGTGCCTCTGCCAGACTTGTCTTTGCTTAGCTTATCTTCCACCGGCTTAAGATTTGGTCTGCATGAAGACTTTCAGGATTGTCCAATGTCTTATCCTTCATCCATGGATAGGCCAATCTCTCGCACTTCTTCAATTGCTGAGTCACTTCTCTCTGGTGGACGTTGA 2013 0.4426 MFFKVVTMVFVLATTVAGEDSVSFAYNGFRSSPHLYLDGGAEFTSGGMLKLTNHTRQQKGHAFFPSPIDFKNTSNGSASSFSTSFVFAISSEYPNLSGHGIVFVVSPTKGLPNSLPSQYLGLFDDINNGNTSNHVFGVELDTIQNTEFGDINDNHVGIDVNELKSVKSAPAGYYSDGEVKNLSLISGYPMQLWVEYDGLKKQIDVTLAPINIGKPERPLLSLSKDLSTILNNSMYVGFSSSTGSIQSYHYILGWSFKVNGEAQQLDISELPKLPRRGSKERSKVLIIVLPIIISLSLVIVGVTLAVVHVMKRKKFTELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKLEVAVKKVSHESRQGMREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLLYLHEEWEQVVVHRDIKASNVLLDAQLNGRLGDFGLSRLYEHGSDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQVGCSGSEILVDWVYNCWKRGEILEARDPNLGTNYKTEEVELVLKLALLCSHSDPSARPSMRQVVQYLERDVPLPDLSLLSLSSTGLRFGLHEDFQDCPMSYPSSMDRPISRTSSIAESLLSGGR* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0051 670 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0051 670 ProSitePatterns Protein kinases ATP-binding region signature. 349 373 IPR017441 GO:0005524
Vra4g0051 670 CDD STKc_IRAK 349 615 - -
Vra4g0051 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vra4g0051 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 2 665 - -
Vra4g0051 670 SUPERFAMILY Protein kinase-like (PK-like) 324 625 IPR011009 -
Vra4g0051 670 PANTHER - 2 665 - -
Vra4g0051 670 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0051 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 277 IPR013320 -
Vra4g0051 670 Gene3D Transferase(Phosphotransferase) domain 1 420 618 - -
Vra4g0051 670 Pfam Legume lectin domain 22 271 IPR001220 GO:0030246
Vra4g0051 670 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Vra4g0051 670 Gene3D - 19 271 - -
Vra4g0051 670 ProSiteProfiles Protein kinase domain profile. 343 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0051 670 CDD lectin_legume_LecRK_Arcelin_ConA 22 260 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0051 Vra-Chr4 1645886 1648264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0051 21 670 Receptor kinase-like Gene Family AT2G37710 64.319 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra4g0051 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0051 - - gmx:100802293 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0765 9 8771424 8774257 Vra4g0051 4 1645886 1648264 PCT