Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0050 ATGGCCACCCTTTTGAAATTGTTGTCTCTTTTGGTGTTTCTTCTTATCCCAGTTTCATCCCAGGTTGAACAGCTTCTCTATGCTGGATTCAAGGATGTGGGTGCTAGCAACCTCACATTGAATGGGGTGGCTGAGATAGAGAAAAATGGAATACTCAAATTGACAAATGAAACCAGCAGGTTAATGGGTCATGCCTTCTACCCATCTCCTTTTCAGATGAAGAACTCCACCACTGGTAAAGTTGTTTCCTTTTCTTCCTCGTTTGCTCTGGCTATTGTTCCTGAGTACCCCAAGCTAGGTGGCCATGGCTTGGCTTTTACAATAGCAACTTCCAAGGATCTCAAGGCTCTACCTAGCCAGTACCTCGGCCTTCTTAATTCCAGTGATAATGGCAACTTCTCCAACCATATCTTTGCTGTTGAGTTTGACACCGTCCAAGACTTTGAGTTTGGGGATATTAATGACAACCATGTTGGAATAGACATCAATAGCATGCAGTCCAATAAATCTGCTAATGTTAGTGTGGTGGGTCTCAATCTCAAAGGTGGGAAACCGATTCTGGCTTGGGTTGATTATGATTCTGAATTAAGTGTTATCAGTGTTGCACTTTCCCCAAATTCATCCAAACCCAACACTCCAATCCTGTCCTTTAATGTGGATCTCGCACCCGTTTTTCATGACACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCCAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTTCCGATGCTTCCACAGCCAAAGAAAAAGCAGACATCTTTGATAGTTGGGGTTTCAGTCTCAGTTGCTGTTATTGTGTTATTAGCCATCGCCATTGGCATTTACTTTTACAGAAAAATCAGGAACGCCGATGTGATTGAAGCATGGGAGCTTGAAATAGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACCAGAGGCTTCAAGGATAAAGAACTCCTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAACTCCAAGATCCAAGTAGCCGTCAAGCGAGTTTCTCACGAATCTAAGCAGGGACTGAGGGAATTCGTGTCGGAAATTGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAATTACTGGGCTGGTGCCGCCGCCGTGGCGACCTCCTGCTTGTGTATGATTTCATGGCCAATGGAAGCTTGGACAAGTACTTGTTTGATGAGCCAAAGATGGTCCTAAGTTGGGAACACAGGTTCAAGATCATAAAGGATGTTGCTTCAGCTCTTCTGTATCTACATGAGGGGTATGAGCAGGTGGTGATACACAGAGACGTGAAGGCCAGCAATGTTCTGCTGGATTTTGAGCTTAATGGAAGACTAGGTGATTTTGGGTTGGCAAGATTGTATGAACATGGGGCTAACCCAAGCACCACAAGAGTGGTGGGCACATTAGGCTATCTGGCTCCTGAGTTGCCTAGAACAGGAAAGGCAACTACAAGCTCTGATGTTTTTGCATTTGGGGCACTTCTGCTTGAGGTGGCTTGTGGGCGCAGGCCAATTGAGCCTAAGGCATTGCCAGAAGAGCTGGTTTTGGTGGATTGGGTGTGGGACAAGTACAAACAAGGGAGAATACTCGATGTGGTGGACCCAAAACTGAATGGAAATTTTGATGAGAAAGAGGTGTTGGTGGTGTTGAAATTGGGGTTGTTGTGCTCAAATGATGTGCCTGCTGCTAGGCCTAGCATGAGGCAAGTGGTGAGGCATTTAGATGGGGAAGTTGAAGTGCCAGAGGACTTGAAAAAACCAGGAGATATAAGTCAGCAGGAGGGGTTTGATGAGTTCTTGCACTCACTTGCATCTTCTTCCTTTGACAAGATGAGTTCAGGCTCCAATTTTGGAAACAGAGACATGGATAGTTTTCTCTCTTTTGCTAATTCACCTCATTCCCTTCTCCACAGAGGAGAAACAAGGTGA 2019 0.4591 MATLLKLLSLLVFLLIPVSSQVEQLLYAGFKDVGASNLTLNGVAEIEKNGILKLTNETSRLMGHAFYPSPFQMKNSTTGKVVSFSSSFALAIVPEYPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSDNGNFSNHIFAVEFDTVQDFEFGDINDNHVGIDINSMQSNKSANVSVVGLNLKGGKPILAWVDYDSELSVISVALSPNSSKPNTPILSFNVDLAPVFHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPMLPQPKKKQTSLIVGVSVSVAVIVLLAIAIGIYFYRKIRNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKMVLSWEHRFKIIKDVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWDKYKQGRILDVVDPKLNGNFDEKEVLVVLKLGLLCSNDVPAARPSMRQVVRHLDGEVEVPEDLKKPGDISQQEGFDEFLHSLASSSFDKMSSGSNFGNRDMDSFLSFANSPHSLLHRGETR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0050 672 Gene3D - 24 254 - -
Vra4g0050 672 PANTHER - 5 654 - -
Vra4g0050 672 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Vra4g0050 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vra4g0050 672 CDD STKc_IRAK 340 606 - -
Vra4g0050 672 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Vra4g0050 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 273 IPR013320 -
Vra4g0050 672 SUPERFAMILY Protein kinase-like (PK-like) 316 604 IPR011009 -
Vra4g0050 672 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Vra4g0050 672 Pfam Protein tyrosine and serine/threonine kinase 337 604 IPR001245 GO:0004672|GO:0006468
Vra4g0050 672 Pfam Legume lectin domain 25 265 IPR001220 GO:0030246
Vra4g0050 672 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 654 - -
Vra4g0050 672 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0050 672 CDD lectin_legume_LecRK_Arcelin_ConA 24 255 IPR001220 GO:0030246
Vra4g0050 672 ProSiteProfiles Protein kinase domain profile. 334 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0050 Vra-Chr4 1618532 1621132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0050 18 617 Receptor kinase-like Gene Family AT3G55550 62.541 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra4g0050 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0050 - - gmx:100784346 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0050 4 1618532 1621132 Vra9g1042 9 13136935 13139469 ECH
Vra4g0050 4 1618532 1621132 Vra4g0050 4 1618532 1621132 ECH