Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0047 ATGTCTTCTTGCTATTTCCCCTTCACTTGCCAAAAAAAGATGGAGTTCAACACCCCAATCTATAAGAAATCTGAGATAAGGTGGAGCTCAGATGATCAAGGTGGCCCTGGACAAGTGAAATCTTATTCTTGTTCCTTCTGCAAGAGAGGATTCTCTAATGCACAAGCCCTAGGTGGCCACATGAATATCCACAGAAGAGATAGGGCAAAGCTCAAGCAATCTTCTGAAGAAAGCTTGCTTTCGTTGGACATCTCAATCAAGACCTCAAGTGATCACAGTAATGACCCTTCTGATTTGGAAGAGAAAATTTTCTTTCGGTTGGGTTCTGGAGAAGATCAGAAGCATTCTAGAAATCGTAAAATGCCATTCAATTTCCCTCACAAAAGTGATCGTGATTATGCATCAGAAAGGGGTGTGTTCATTGGTTCAGCAGAAATTCCTCATCATCTTCCTTCTTTTGTTTTCGGGCAGCGAATTGAAGAGAAGACAGCTGATTTAGACCTTGAACTTAGGTTAGGCCTTTATCCACAGGAGTCAGCAACATTGAACACTAGATCGTTCTTTTGA 567 0.4145 MSSCYFPFTCQKKMEFNTPIYKKSEIRWSSDDQGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEESLLSLDISIKTSSDHSNDPSDLEEKIFFRLGSGEDQKHSRNRKMPFNFPHKSDRDYASERGVFIGSAEIPHHLPSFVFGQRIEEKTADLDLELRLGLYPQESATLNTRSFF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0047 188 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Vra4g0047 188 PANTHER OS07G0101800 PROTEIN 80 177 - -
Vra4g0047 188 PANTHER OS07G0101800 PROTEIN 3 76 - -
Vra4g0047 188 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vra4g0047 188 Gene3D Classic Zinc Finger 22 97 - -
Vra4g0047 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vra4g0047 188 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 80 177 - -
Vra4g0047 188 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0047 Vra-Chr4 1523816 1524382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0047 38 181 C2H2 Transcription Factor Family AT3G53820 39.310 7.33e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0047 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0047 - - ccaj:109793777 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0047 4 1523816 1524382 Vra4g0047 4 1523816 1524382 ECH