Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0046 ATGGAGGAGGGTCAATGTTTGATGAGGAGTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTCATGGTTCTTCTACTGATTACCCTTCCTATGATGATCACTCATGGGAAGAGCAAGCCTTTGCTAAAGATGCTGCTTGGTCTGGTTGTGTGTGGCCACCACGATCATATTCTTGTACCTTTTGCACAAGGGAATTTAGGTCAGCACAAGCTTTAGGAGGTCATATGAATGTTCACAGAAGAGATAGAGCAAGACTAAAGCAGCCACATAGCCCTCAGAATGAAATCCTCAATTATGATCCTGAGAAAACTCAAGCCCAGAATTCGGTTCAAATTTCTTTCACTTCATTGGGTTACTTATACCCACCTTCTATCACTGGATTGCCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCCCCTTCCAAAGTTTTAGGCGCACCAGTTAACAAGAGATGCAGAGAGAAACCCCAGATTCCACAATACAATAGTTCTTCAATTTTCAAAGGATGTCATGAGTCTCCTCCTTCTCTTTCTTCCAAATCCTGGCCAAATTTAACTGATGACTTCAGATTTTGTTCGAGTAGGCTCGATCTTGAAGCTAGTGTTGAGACAAAATTGCAGGGATTGGATTCTGGGTGTAGGAGTGAGGGTGATAAGGGTAAAACTGAGGTGGCTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCAGTTGTGCAGTTTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGACACTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGATAAGGATCATGTGCAGTCAGAGATGTTTGATTTTAGCCCTAGCTCTATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCATAGGTCCGAGGGAGAATATTATCCCAACAAAACTCATTGGACCTTGCAACGCAATTTTTGTTTCTTCTTCTCCATGCATGAATTAGGTTGCGAGGTGAAATAG 1008 0.4177 MEEGQCLMRSKRKYSLSSSLHGSSTDYPSYDDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPHSPQNEILNYDPEKTQAQNSVQISFTSLGYLYPPSITGLPHNTNPNSDPYSHVVASPSKVLGAPVNKRCREKPQIPQYNSSSIFKGCHESPPSLSSKSWPNLTDDFRFCSSRLDLEASVETKLQGLDSGCRSEGDKGKTEVAVSMNLFMSRAHPVVQFENKETDTSFKKRKSDTSSIPFFPKSCSVDKDHVQSEMFDFSPSSIEELDLELRLGHRSEGEYYPNKTHWTLQRNFCFFFSMHELGCEVK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0046 335 SMART c2h2final6 56 78 IPR013087 -
Vra4g0046 335 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Vra4g0046 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vra4g0046 335 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 305 - -
Vra4g0046 335 Pfam C2H2-type zinc finger 56 80 - -
Vra4g0046 335 PANTHER OS07G0101800 PROTEIN 1 305 - -
Vra4g0046 335 Gene3D Classic Zinc Finger 52 112 - -
Vra4g0046 335 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0046 Vra-Chr4 1510720 1513405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0046 34 147 C2H2 Transcription Factor Family AT2G37740 45.139 2.84e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0046 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0046 - - vra:106758996 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0046 4 1510720 1513405 Vra6g0670 6 6221946 6222584 ECH
Vra4g0046 4 1510720 1513405 Vra9g1038 9 13090431 13092175 ECH
Vra4g0046 4 1510720 1513405 Vra4g0046 4 1510720 1513405 ECH