Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0020 ATGGCCAAACCAACTCATGCAAAACCAGGTTGTTTTTCTGACTTCTTTCACCTTCTCTTTTGTGCTCAGAATGGAAACACCTCTCAAATGCACCCTTATTCTGACCCCATTAAAAAACCATATGCATCAGAACCACTGCATGCTCATAATAATGATGCAACTAAACCAGGAGTTGTGGCAAGGCTAATGGGGCTTGATTCACTGCCAACTACCAACTTCGTATCAAACTCAACCACCCCAGATTCAGTTCCAAGAAGTAGGTCAGTCAACTTTCTGGATTACTTGCTCAAGTTTGACACAACCCAAGCCAACCATCACCAAGTCAAAACCTCAGCATCCTTCAGAGAGGTTCCTGCACCGTTTCAGCACAAAAGCAAAAGCCACGATCTTGTTGTGTTCTACTGGGATAGTGGGAGTGAAGATCATGAAGTTGGATCCTTTTCTAGGATTCAAGAAATGGGGTTGGAAGAATCTAGACAGAGAAAGAAGCAGGGAAGCAAGAACAAGGAGATTGTTGGTGTGACAGAGGAGAGGAACCTCACAAAGAGAAGGCAATTTTCCAAGTTCGAGAATGAGCCTAGAGTGCTTCCTCTTAAGCATGGTTCAAAGGTTCGAAATCACAATGAAGCTAAAGCTTTGGCACCAGTTTCTGCGTGCTCTAGGAGTTCTGGTAATGGAAGAAAAGGTGGTGGTAGTGGTCCTAGTGGCTTAGGAACATCCTCAACATTGCCAAATAAGCAGAAGAAATTGCCCTCTGAACCAAAACGATTGAAGAATACCAGAAAACAACACGAGATAGAGAGTGAATGTAGCTCAGAGAATTTCAGTGCAATCTCAGTCCTAGACGACTATGACTTCTCATTTCTTTATGGACCAGATTTTCCAGATTACAGAAGGCACTTAAAGGCAAAGACAAAGTGGGAATTTTCAGAAGTGTTAATGGATGATGATGATGTTGGAGACAGAGCAAGAAAGGACAAAGAATGTTCCTATCCTGACATTAACCAGAAAAAAGAGTGCTTATCAGAATTAAGGGAGAAGCTTTGCAAGTTTACAGAAAATGATTTGAGAGAATCAGATTTCACAAGAAAACGCTTGTGTGAGGGTGAAAATTATGAAGAGATTTGTTTGGAGTATGAGCATAAAATTTTTGACATTTTACTACACCAGCTTGTCAATGAACTTGTGGAACTTTCATATTGA 1203 0.4115 MAKPTHAKPGCFSDFFHLLFCAQNGNTSQMHPYSDPIKKPYASEPLHAHNNDATKPGVVARLMGLDSLPTTNFVSNSTTPDSVPRSRSVNFLDYLLKFDTTQANHHQVKTSASFREVPAPFQHKSKSHDLVVFYWDSGSEDHEVGSFSRIQEMGLEESRQRKKQGSKNKEIVGVTEERNLTKRRQFSKFENEPRVLPLKHGSKVRNHNEAKALAPVSACSRSSGNGRKGGGSGPSGLGTSSTLPNKQKKLPSEPKRLKNTRKQHEIESECSSENFSAISVLDDYDFSFLYGPDFPDYRRHLKAKTKWEFSEVLMDDDDVGDRARKDKECSYPDINQKKECLSELREKLCKFTENDLRESDFTRKRLCEGENYEEICLEYEHKIFDILLHQLVNELVELSY* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0020 400 MobiDBLite consensus disorder prediction 155 207 - -
Vra4g0020 400 Pfam DUF761-associated sequence motif 56 73 IPR032795 -
Vra4g0020 400 MobiDBLite consensus disorder prediction 218 248 - -
Vra4g0020 400 PANTHER ALC-INTERACTING PROTEIN 1 1 399 - -
Vra4g0020 400 MobiDBLite consensus disorder prediction 155 268 - -
Vra4g0020 400 PANTHER OS05G0128300 PROTEIN 1 399 - -
Vra4g0020 400 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0020 Vra-Chr4 570838 572472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0020 1 395 TRM (TON1 Recruiting Motif) Superfamily AT5G01370 25.684 3.19e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0020 - - gmx:100775965 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0020 4 570838 572472 Vra4g0020 4 570838 572472 ECH