Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0019 ATGGAGGGTCGTCATCTCCATCACCATCACCATCACCGGCAGCAGCAGCAGCAACAACAACATCAGCATCACCACTCTCACAACATCACAACCGGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTCTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGCGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGGTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCGCATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGGTATCATCAGAGGATGAGGAAGAGGGAAACGAAGAGAGTGAGGGAGATCAGAAGGGTAGCGTGATGAAAAAGAAGAAGAAGGGGAAGATGGTAATAGGAGGAGGAGGGAGTAGCAGTAGCAATATGGAGAGTTTGAAGGAGATCATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAACGAGAGGAGGATGAAAGAGATGGAGTGGAGGCAAACCATGGAAGCATTGGAGAATGAGAGAATGATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAACTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCACTTCTCAACAAGCTCACAAGAGAACAGATGTAG 852 0.4953 MEGRHLHHHHHHRQQQQQQQHQHHHSHNITTGANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCEAIEPEAMRQQFPFYNELQGIFASRMQRMLWAEAEGGSKKKVVQVSSEDEEEGNEESEGDQKGSVMKKKKKGKMVIGGGGSSSSNMESLKEIMEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRQTMEALENERMMMDQRWREREEQRRIREELRADKRDALITALLNKLTREQM* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0019 283 Coils Coil 192 212 - -
Vra4g0019 283 CDD GT1 42 107 - -
Vra4g0019 283 MobiDBLite consensus disorder prediction 1 20 - -
Vra4g0019 283 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 281 - -
Vra4g0019 283 Pfam Myb/SANT-like DNA-binding domain 43 125 IPR044822 -
Vra4g0019 283 PANTHER - 1 281 - -
Vra4g0019 283 MobiDBLite consensus disorder prediction 1 27 - -
Vra4g0019 283 ProSiteProfiles Myb-like domain profile. 44 100 IPR001005 -
Vra4g0019 283 MobiDBLite consensus disorder prediction 146 191 - -
Vra4g0019 283 Gene3D - 44 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0019 Vra-Chr4 518063 519652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0019 21 281 Trihelix Transcription Factor Family AT2G38250 53.091 1.32e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra4g0019 Myb_DNA-bind_4 2.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0019 - - gmx:100794230 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0019 4 518063 519652 Vra4g0019 4 518063 519652 ECH