Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0014 ATGATGTCAAGTGTTGCTTGGTTCAAATGCATTGTCTGGTTTCTTCTCTGCTGTTCAAACTTTTGGTCTCAAAATATAGTAACTACCTATGCATTTGGAAATGAGACCGATCAATCAGCACTGCTCAAATTCAAAGAATCAATAGATCTTGACCCTAATGAAGTGTTCAACTCTTGGAATAGTACAAGCCACTTTTGCAAGTGGAACGGAGTCACATGCAGTCCACGACACCAAAGAGTTACAGAGCTAAATCTAACAGGATGTCACTTGCATGGTTTCATATCACCATACATTGGTAACCTTTCGTTTTTGAGAAAGCTCTTCCTCGAGGACAATCACTTCTATGGTGAAATTCCACAAGAATTGGGGCGTTTGTTCAGAATACGTGTACTATATTTCACCAATAACATCTTAGGGGGAGAGTTTCCTATCAGCTTGGCAAATTGCTCTGAACTGAGATACTTAAGTTTAGATAGCAATCTTTTCACTGGTGAAATACCAAGAAAGATTGAATCCTTTGGCAATCTTAAACAGTTGAGAATTCGGGGGAACAATCTAACTGGACAAATCCCACCTTCCATTGGAAATTTATCTTCCCTCACTCGACTTTCTTTGAGTTCAAATACACTGCAGGGATTCATTCCAGAAGAAATAGGCCTCCTGAGAAATTTGAGAATATTGGGCTTGTCAAATAATAAACTATCTCACAGCATTCCACTTTCCTTGTACAATTTGTCATCTCTCTATATCTTCTCACTCACAAACAATCAATTTAATGGCTCTTTTCCAGACAACATGTTCCTCACCCTACCTAATCTTGAAGAGTTTACAGTGAGTGGGAATCAATTCTCAGGTTCAATCCCAGCTTCCATCACTAATGCATCAGGGATGCAAATATTGGATATTGGTGACAACCAATTGGTAGGACAAGTTCCAAGTCTAGGGAAGTGGAAGGATATTTCAACTCTGCAGCTAAGTTTAAATAATCTGGGTAACAATTCATCTAATGACTTGCAATTTTTGAAGTCTTTGATCAATTGTAGTCAGCTAGATATATTAGATATAGGGTACAACAATTTTGGAGGGCCTTTTCCTAGGCATGTGAGCAATCTCACCACCAAACTCACCCAACTAATTGCTGGTGGCAATAACATTTTTGGAGAAATTCCTATGGAATTAGGAAATCTTGTTAACTTAATTACCTTGGCTTTGGAGAAAAATAGCCTAACTGGCATCATTCCAACTAGTTTTGGTAAGCTTCAAAAGATGCAATTATTAAGTTTGGGAGTAAACAAATTGTTTGGAGAGATCCCTCCTTCCATAGGCAATCTGAGTCAGTTGTATTACCTAGAACTGTCATCCAATATGTTTGTTGGAAATATTCCTTCAACCATTGGAAATTGCCAACATTTACAATTTCTACATCTTTCAAACAATAGTCTCACTGGAGCTATACCATCACAACTATTTGGAATTCCCTCTTTATCTACTGCACTGGACCTATCATATAACTCATTAAGTGGCAGTCTATCAGCAGAAGTGGGCATGCTAAAAAATATTGACATTCTGGATGTGTCTGAAAATTATATCTCTGGTGTCATTCCTGAAACAATTGGAGAATGCATAACCTTGGAGTACCTTTATTTAAAGGGTAACTCCTTCCATGGAAGCATGCCTCCTTCATTGGCATCCTTAAAAGGTCTTAGAGAAGTAGACCTTTCTAGAAACAACTTGTCTGGATCAATTCCAGAAACACTACAAAACCTTTCTTTTCTGGAATACTTCAATGCTTCTTTCAACATGTTGGAGGGTAAGGTGCCAACAAATGGTGTCTTTCAAAATGCTAGTTCAATTTTAGTGGCTGGAAATAGCAAGCTTTGTGGTGGGATATCTGAACTAAAGCTTCCACCTTGCCCTTTAGAAGCTAAGACAAGAAGAATACACCATAATCTCAAGTTAGTAGTGGCGATATCCTGTGTGGTTTTTTTTCTTTCTACACTATCCTGTATCCTTGGTATGTTTTTGATAAGGAAAAGACACAAAAAGTCATCTACCAATTCAACAATTGATCAACTTCCTAAGGTATCATACCAGAACCTACTCCATGCAACTGATGGGTTCTCATCTTGGAACTTGATAGGAACAGGAAGTCACGGGTCTGTATATAAAGGAATTCTTGATCCGATGGAAGGATTTGTTGCTATAAAGGTTCTAAACCTCCAAAAAAAAGGGGCTAAGAAAAGTTTTATGGCTGAATGTAAAGCATTAAGACATGTTCGGCACAGGAACCTAGTGAAGGTTGTTACATGTTGCTCTAGTGTGGATTACAATGGAAATGATTTTAAAGCTTTAGTGTTTGAGTATATGCCAAACGGAAGCTTAGAGGAATGGTTGCATCCACAAAATGGAAGAGAAGAACAAACAAGAACTTTGAACCTTGAGACAAGATTAGAAATTGTGGTTGGTGTTGCTTCTGCACTACACTATCTTCACCATGAGTGTGAGGAACCTATTATTCACTGTGATTTAAAGCCAAGTAATATTCTTCTTGATGATGACATGGTTGCTCATGTTAGTGATTTTGGCTTAGCAAGACTTCTCTCAACAATCAACAACTTTGACAACCTTAGTACAAGTGGAATAAAAGGGACTATAGGTTATTGTCCCCCAGAGAATGGAGCAAGTTTTCAGGTGTCAACAAAAGGTGACATGTACAGCTTTGGTATTCTAATTCTGGAGATGTTAACTGGGAGACGACCGACAGAAGAAATGTTCAAAGATGGACACAACCTCCATAACTATGCTAAAATTTCATTTCCAAATAACTTGTTGGAGATTGTTGATGCAACTCTTGTTTCAGTGGAAAATGTATCTCCTACAATTACAGCATCAGAACAGCACAACATATCTGAGATTGCAGATAATTTGCATCTTAATACCAAAATGTGTTTGCTTTCATTATTTAAGATTGGTCTAGCTTGCTCAGTGGAGTTACCAGGAGAAAGGTTGGACATGATGGAAGTCATCAGGGAGCTAAATATGATACGAAATGCTTTTTATGCTTGA 3066 0.379 MMSSVAWFKCIVWFLLCCSNFWSQNIVTTYAFGNETDQSALLKFKESIDLDPNEVFNSWNSTSHFCKWNGVTCSPRHQRVTELNLTGCHLHGFISPYIGNLSFLRKLFLEDNHFYGEIPQELGRLFRIRVLYFTNNILGGEFPISLANCSELRYLSLDSNLFTGEIPRKIESFGNLKQLRIRGNNLTGQIPPSIGNLSSLTRLSLSSNTLQGFIPEEIGLLRNLRILGLSNNKLSHSIPLSLYNLSSLYIFSLTNNQFNGSFPDNMFLTLPNLEEFTVSGNQFSGSIPASITNASGMQILDIGDNQLVGQVPSLGKWKDISTLQLSLNNLGNNSSNDLQFLKSLINCSQLDILDIGYNNFGGPFPRHVSNLTTKLTQLIAGGNNIFGEIPMELGNLVNLITLALEKNSLTGIIPTSFGKLQKMQLLSLGVNKLFGEIPPSIGNLSQLYYLELSSNMFVGNIPSTIGNCQHLQFLHLSNNSLTGAIPSQLFGIPSLSTALDLSYNSLSGSLSAEVGMLKNIDILDVSENYISGVIPETIGECITLEYLYLKGNSFHGSMPPSLASLKGLREVDLSRNNLSGSIPETLQNLSFLEYFNASFNMLEGKVPTNGVFQNASSILVAGNSKLCGGISELKLPPCPLEAKTRRIHHNLKLVVAISCVVFFLSTLSCILGMFLIRKRHKKSSTNSTIDQLPKVSYQNLLHATDGFSSWNLIGTGSHGSVYKGILDPMEGFVAIKVLNLQKKGAKKSFMAECKALRHVRHRNLVKVVTCCSSVDYNGNDFKALVFEYMPNGSLEEWLHPQNGREEQTRTLNLETRLEIVVGVASALHYLHHECEEPIIHCDLKPSNILLDDDMVAHVSDFGLARLLSTINNFDNLSTSGIKGTIGYCPPENGASFQVSTKGDMYSFGILILEMLTGRRPTEEMFKDGHNLHNYAKISFPNNLLEIVDATLVSVENVSPTITASEQHNISEIADNLHLNTKMCLLSLFKIGLACSVELPGERLDMMEVIRELNMIRNAFYA* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0014 1021 Gene3D Phosphorylase Kinase; domain 1 672 788 - -
Vra4g0014 1021 PANTHER OS04G0122200 PROTEIN 22 1020 - -
Vra4g0014 1021 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Vra4g0014 1021 SUPERFAMILY L domain-like 34 330 - -
Vra4g0014 1021 Gene3D Ribonuclease Inhibitor 267 335 IPR032675 -
Vra4g0014 1021 ProSiteProfiles Protein kinase domain profile. 707 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0014 1021 SUPERFAMILY L domain-like 373 628 - -
Vra4g0014 1021 SMART serkin_6 707 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0014 1021 SMART LRR_typ_2 197 220 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 420 444 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 565 588 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 270 294 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 396 419 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 468 492 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 221 245 IPR003591 -
Vra4g0014 1021 SMART LRR_typ_2 101 125 IPR003591 -
Vra4g0014 1021 Pfam Leucine Rich Repeat 568 589 IPR001611 GO:0005515
Vra4g0014 1021 Gene3D Transferase(Phosphotransferase) domain 1 789 1019 - -
Vra4g0014 1021 Pfam Leucine rich repeat 175 234 IPR001611 GO:0005515
Vra4g0014 1021 Pfam Leucine rich repeat 446 506 IPR001611 GO:0005515
Vra4g0014 1021 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Vra4g0014 1021 Pfam Protein kinase domain 711 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0014 1021 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vra4g0014 1021 SUPERFAMILY Protein kinase-like (PK-like) 680 1013 IPR011009 -
Vra4g0014 1021 PANTHER LRR RECEPTOR-LIKE KINASE 22 1020 - -
Vra4g0014 1021 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Vra4g0014 1021 Gene3D Ribonuclease Inhibitor 336 639 IPR032675 -
Vra4g0014 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Vra4g0014 1021 Gene3D Ribonuclease Inhibitor 193 266 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0014 Vra-Chr4 393631 397274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0014 26 1020 Receptor kinase-like Gene Family AT3G47570 45.788 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra4g0014 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0014 - - gmx:100797146 1469.52