Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1219 ATGGCCTCCATCGCAGCCACCACATCATACTTCTTCGGCACCCGTCTCTACAGCCCAACTACCTTAAACACCGGAAGGTTCCACGCGTTCTTCAACTTCGGCACCAAGAAGGCGCCGCCGCCGCCGCCGAAGAAAAAGGAAGTCAAAGTGAAACCCTCCTCCGGTGATCGCCTGGTGTGGTTCCCGAATGCAGAGCCACCGGAGTGGCTCGACGGAAGCTTGATCGGCGACCGCGGGTTCGATCCGTTCGGGTTCTCAAAGCCCGCGGAGTACCTGCAGTTTGACCTGGACTCGCTGGATCAGAACCTTGCGAAGAACGTCGCCGGCGAAATCATCGGAACAAGGGTGGAGGTTGCAGAGGTCAAACCGACGCCGTTTCAGCCATACACGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAAGTCATTCACGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGCTCTCACTGGAGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGACTTCCACTTCCATTTTCATTGACAACACTGATATGGATCGAGGTGATAGTGATAGGATACATAGAGTTTCAAAGAAACGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGAGGCAAGTTCTTCGATCCTTTGGGTTTGGCCAACGACCCTGAAGAAAAAGCCAGACTTCAACTTGCAGAGATCAAGCATTCCCGCTTGGCCATGGTCGTCTTCCTCATCTTTGCCATTCAAGCTGCTGTCACTGGAAAAGGTCCCATCAGTTTTATTGCTACTTTCAACAAGTGA 837 0.5364 MASIAATTSYFFGTRLYSPTTLNTGRFHAFFNFGTKKAPPPPPKKKEVKVKPSSGDRLVWFPNAEPPEWLDGSLIGDRGFDPFGFSKPAEYLQFDLDSLDQNLAKNVAGEIIGTRVEVAEVKPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFIATFNK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1219 278 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC 3 278 - -
Vra3g1219 278 Pfam Chlorophyll A-B binding protein 66 262 IPR022796 -
Vra3g1219 278 SUPERFAMILY Chlorophyll a-b binding protein 55 275 - -
Vra3g1219 278 Gene3D Chlorophyll a/b binding protein domain 59 278 - -
Vra3g1219 278 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 278 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1219 Vra-Chr3 12945141 12946997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1219 12 275 Chloroplast and Mitochondria Gene Families AT3G08940 72.348 4.60e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1219 K08915 - gmx:100820335 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1219 3 12945141 12946997 Vra6g0598 6 5399415 5402019 PCT