Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1209 ATGGCCTCCAGAGGAACTGGAACGCTGATTTGGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACAGAACCAATCAACCTTCCTCTCGTGATCAGCGCTCGGATATCCCTTTGGAACAAGATTTGGAGGGTGTCACTCACAAGGTGTATTTCGACATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGAAACACAGTTCCGAAAACTGTAGAAAACTTTCGGGCGCTTTGTACGGGAGAGAAAGGAAAGGGAAGAAGTGGGGTGTCTCTTCATTATAAAGGAAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGAGGAGAATCAGTCTACGGTGAAAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATATTTATCTATGGCGAATTCTGGACAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACGTATTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCATGA 687 0.4556 MASRGTGTLIWVCLLWLFFLCATIAFFQLHLVDNRTNQPSSRDQRSDIPLEQDLEGVTHKVYFDIEIHGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGKGRSGVSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESVYGEKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVISDSGELTS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1209 228 CDD cyclophilin_ABH_like 59 224 - -
Vra3g1209 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 173 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 225 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 MobiDBLite consensus disorder prediction 214 228 - -
Vra3g1209 228 SUPERFAMILY Cyclophilin-like 57 226 IPR029000 -
Vra3g1209 228 MobiDBLite consensus disorder prediction 209 228 - -
Vra3g1209 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 42 226 - -
Vra3g1209 228 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 110 127 IPR020892 GO:0003755|GO:0006457
Vra3g1209 228 Gene3D - 50 228 IPR029000 -
Vra3g1209 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 222 IPR002130 GO:0000413|GO:0003755
Vra3g1209 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 42 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1209 Vra-Chr3 12856148 12858883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1209 73 220 U-box Gene Family AT5G67530 44.000 2.97e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1209 K01802 - gmx:100792649 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1209 3 12856148 12858883 Vra3g1209 3 12856148 12858883 ECH