Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1204 ATGGCTGATATCGTAGTTGACGCAAGGAGTTTTAGTTGGGCAGTGGACAGTGCCATAGCGAGTGAGAGTGCGTCAGATATGGGAGAATCTCGTGTCCGCAGTTTTGCTTCGGTAGTGGACAGTGCCATAAGGAGTAGCAGTGCTACTGAAGCGGATTTTGAAACATCCGCCCCTATCAGTTGTTTTGCTTTTGCTTCTGCGGTGACCCAAAGAATTGTTGCTGCACGACTATCACAAGCAGTGTCGGATGGGATAGGATATGTTCATACACGATTATTCACCCTAGCTGAGCTTAAAGCGGCCACCAACAATTTCTCACTTCACAACAAGATTTTTGGTGCTGGAAGCATTAGTGTTGTGCACAGAGGTAAACTCTTTGATGGTCGTGAGGTGGCTATCAAAAGGGCTGAAACCAGTTCTAAGATGAAGGAGTTTCAAGAGTTATTTGGCTATTTATCCCTTTTGCCCTGCCTACACCATAATCACTTGGTTGGGCTAGTTGGATTCTGTAAAGAGAAAGATAAAAGGTTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTATATGATCATTTGCATGACAAAAAGAATGTGGACAAGGAGAGCAGTGTGTTGAATTCTTGGAGAATGAGGATCAAGATTGCTTTGGATGCTTCCCGGGGAATAGAACACCTTCATAAATATGTAGTTCCAACTATTATTTACAGAGATATCAAGTCTTCCAACATTCTTCTTGATGCTAATTGGACGGCAAGAGTATCTGGTTTTGAATCGTCGTGTTTCATGAGTCCAGAAGCTGAGCATGTTTACACGGATATGGTTACCGCAAAGAGGGATGTGTACGGGCTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAAAACTACATTCAAGTATGGGTCATATAGGTGCACACGTATGGTGAACATTGCACGACATGTTATTTTGGATGGGAAAATGGTGAACGTTTTGGATCCAAGGGTTGGAGCACCCCATGGAAATGACGAAGCAGAGGCACTGGAATTAGTGGCCCATACAGCGGTCAATTGTGTAAATTTGAACAGGAAAGATAGGCCAACTATGACTGAGGTAGTGGCCAATTTGGAGACAGCTTTATCACTTGCCAGTGATAACAGAAAAACAGACCATTTGCACTATTTATGA 1167 0.4327 MADIVVDARSFSWAVDSAIASESASDMGESRVRSFASVVDSAIRSSSATEADFETSAPISCFAFASAVTQRIVAARLSQAVSDGIGYVHTRLFTLAELKAATNNFSLHNKIFGAGSISVVHRGKLFDGREVAIKRAETSSKMKEFQELFGYLSLLPCLHHNHLVGLVGFCKEKDKRFLVYEYMKNGALYDHLHDKKNVDKESSVLNSWRMRIKIALDASRGIEHLHKYVVPTIIYRDIKSSNILLDANWTARVSGFESSCFMSPEAEHVYTDMVTAKRDVYGLGVVLLELLTGKKTTFKYGSYRCTRMVNIARHVILDGKMVNVLDPRVGAPHGNDEAEALELVAHTAVNCVNLNRKDRPTMTEVVANLETALSLASDNRKTDHLHYL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1204 388 Pfam Protein kinase domain 110 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1204 388 Gene3D Phosphorylase Kinase; domain 1 67 182 - -
Vra3g1204 388 Gene3D Transferase(Phosphotransferase) domain 1 183 386 - -
Vra3g1204 388 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 63 377 - -
Vra3g1204 388 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 7 82 - -
Vra3g1204 388 SMART serkin_6 105 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1204 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vra3g1204 388 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 7 82 IPR044815 GO:0004674
Vra3g1204 388 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 63 377 IPR044815 GO:0004674
Vra3g1204 388 ProSiteProfiles Protein kinase domain profile. 106 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1204 388 SUPERFAMILY Protein kinase-like (PK-like) 85 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1204 Vra-Chr3 12818171 12819337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1204 93 378 Receptor kinase-like Gene Family AT3G55950 52.978 2.76e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vra3g1204 Pkinase 5.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1204 - - vra:106757051 751.51