Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1203 ATGAAAACACCACCTTCCTCCTCCGTGCCCCTCTGTCTCGTCGTCGCCGCCCTGCTTATACTCTCTCTGCCACGCTCTTCTCATGGCCTCGGTTCCGGCGCTACCCTTGCCGTCTCTGACGCCTCCGCCACCGTGTGCGCCGTCGTGGCAGGCGAGTCCATTCGCCGCATTCAGTGTTACCGTCAGGGACAGAGTGTCTCCATCATTCCCAACGTTAGTTTTTCAATGATTTCGGGTGGGAGGAACTACTTCTGTGGTCTAAGGTCAAGTAACTCAGATTTACTTTGTTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTGGCCGTTGGGGATACCCACGTTTGCGCCACCGAGGTGGGTGCTGGCACGGTCAAGTGCTGGAGAACCGGTGACACGTTTCAGCTTCCTTCTGTGACTGATACATTCTCTTCGATCTCATCTGGGTCTGGCTTCTCTTGTGGAATTTTGAGGAATAATTCTCGGGTTCGGTGCTGGGGAGACACCAGCGTTTCGGATTTAACGGAACGGATTGAGAATGCATTTGGGAACATGTCCATGTTGAGTCTTGTCGCAGGTGGTTCACATGTTTGTGGATTGAACTCAACTGGGTTTGTGGCATGTGGCGGAAATAACGATTCTGGACAACTTGATTTTCCTCAAGGTGGGGCTTTTGAGTATTCTGCGGTGGCGCTTGGAGCCGAACATGGCTGTGCTATCAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGGGATTCTTGGGGACTAATGTTACGGATGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACAATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATAGTTCGACGTTTGAGCTTCCTTTTCCACCTGTTCTTCCAGGGTCTTGTGTTCAATCTTCCTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCTGGCTCTGGTAACATTTGTAAACCAATGACTTGTAAGCCTCAAACAACAGCTCCACCGCCGCCATCACCGTCACCGCCTCCACCATCAATGCCACCGCCGCCAGCATCACCGCCACCGCCACCACCTTCGTCATCGCGATCAAAGACCTTGACAAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTGGGAGCTTTTGCTGGAATATGCACTATAGTTTATTGCTTGTGGAGTGGTGTTTGTTTTGGGAAGAAGAAAGTTCACAATTCTGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAACGGTGGGGGTGCTTCTAATAATAGCAATTCTTCAATATCATCTATGATTATGCGTCAGACTTCAATAATAATGAGACGCCAGAGGAGTGGAACGTCCTCAACGAAGCACCCAGACAGGGCTGAGGAGTTCACCCTGGCCGAGCTTGTGGCAGCCACCGACAATTTCTCAGCAGAAAACAAGATCGGAGCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAACTCGCGGATGGACGCGAGGTGGCAATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTCGAGTCTGAATTGGCCTTCTTGTCTCGTCTACACCACAAGCACTTGGTTGGACTGGTTGGATTCTGCGAAGAGAAAGATGAGAGGCTCTTGGTGTACGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCATGACAAGAACAACGTGGAGAAGGGTAACAGTGTGTTGAATTATTGGAAAATAAGGATAAAAATTGCTTTGGATGCTGCCCGGGGAATAGAGTATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATAAAGTCTTCTAACATTCTTATTGATGCTACTTGGACGGCAAGAGTATCGGATTTTGGATTGTCTATGATGAGTCCAGAACCCGACCGTGATCACCGACCAATGAAGGCAGCAGGAACCGTTGGATACATTGATCCGGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTACTACTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGGGAAGACGGAGGCAGCCCACTAAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATGAAAGGGTTGGACCACCCGATGTGAATGAGGCAGAGGCAGTGGAATTAGTGGCCTATACAGCTGTCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGACTGACATTGTGGTCAATTTAGAGAGAGCTTTGGCTGTTTGTGAGAGTAGCCATGATACCATTTCCAGTGGCTCTATCTCTGTTGTTTCAGAATGA 2430 0.4774 MKTPPSSSVPLCLVVAALLILSLPRSSHGLGSGATLAVSDASATVCAVVAGESIRRIQCYRQGQSVSIIPNVSFSMISGGRNYFCGLRSSNSDLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHVCATEVGAGTVKCWRTGDTFQLPSVTDTFSSISSGSGFSCGILRNNSRVRCWGDTSVSDLTERIENAFGNMSMLSLVAGGSHVCGLNSTGFVACGGNNDSGQLDFPQGGAFEYSAVALGAEHGCAIRGLNGSVVCWGGNGGFLGTNVTDGVSFEVIVSGSNFVCGLTTNNLTVVCWGPGWSNSSTFELPFPPVLPGSCVQSSCGECGSYLDSQSLCSGSGNICKPMTCKPQTTAPPPPSPSPPPPSMPPPPASPPPPPPSSSRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELVAATDNFSAENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGNSVLNYWKIRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSMMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGSPLSVVDFAVPRILAGELVKILDERVGPPDVNEAEAVELVAYTAVHCVNLEGKDRPTMTDIVVNLERALAVCESSHDTISSGSISVVSE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1203 809 Pfam Protein kinase domain 501 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1203 809 MobiDBLite consensus disorder prediction 355 387 - -
Vra3g1203 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vra3g1203 809 Gene3D - 188 361 IPR009091 -
Vra3g1203 809 ProSiteProfiles Protein kinase domain profile. 500 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1203 809 SMART serkin_6 500 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1203 809 Gene3D Transferase(Phosphotransferase) domain 1 581 802 - -
Vra3g1203 809 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 9 806 - -
Vra3g1203 809 MobiDBLite consensus disorder prediction 436 456 - -
Vra3g1203 809 SUPERFAMILY Protein kinase-like (PK-like) 477 785 IPR011009 -
Vra3g1203 809 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vra3g1203 809 SUPERFAMILY RCC1/BLIP-II 57 264 IPR009091 -
Vra3g1203 809 MobiDBLite consensus disorder prediction 355 389 - -
Vra3g1203 809 Gene3D - 26 187 IPR009091 -
Vra3g1203 809 Gene3D Phosphorylase Kinase; domain 1 460 580 - -
Vra3g1203 809 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 9 806 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1203 Vra-Chr3 12807499 12810195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1203 1 809 Receptor kinase-like Gene Family AT3G55950 59.036 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra3g1203 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1203 - - gmx:100786639 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1203 3 12807499 12810195 Vra6g0590 6 5317339 5320140 PCT