Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1195 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCAATGTGACTATGGAAAACTACTATGATTCTGGCTGGCACATGAGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTTCCTACACAAATACTTCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGAAGAAGAGAGAGCAATGAGTGCTTCCAAGAGCCACAGCCAAGCTGAGAAAAGGCGCAGAGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAATCCGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGACCATGTAGAAGATGAAAGCTGCACTAAAGTGAACAAATTGAAGGAGAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAGGGCTTGAGACTGACGGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCCGGATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCTCTCAAATCTGCTGTCACCAAAATAGCTTCATCATCCATGACATCTAATTGCCCCACCAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 819 0.4408 MGDKRLRNHGRNFRMVSNVTMENYYDSGWHMSTSWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAEEERAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVEDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1195 272 MobiDBLite consensus disorder prediction 79 97 - -
Vra3g1195 272 MobiDBLite consensus disorder prediction 77 97 - -
Vra3g1195 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Vra3g1195 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Vra3g1195 272 PANTHER TRANSCRIPTION FACTOR BHLH51 46 270 - -
Vra3g1195 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Vra3g1195 272 CDD bHLH_AtAIG1_like 78 155 - -
Vra3g1195 272 SMART finulus 89 138 IPR011598 GO:0046983
Vra3g1195 272 PANTHER TRANSCRIPTION FACTOR BHLH30 46 270 IPR045847 GO:0003700|GO:0006355
Vra3g1195 272 CDD ACT_UUR-ACR-like 179 214 - -
Vra3g1195 272 Gene3D - 77 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1195 Vra-Chr3 12727476 12729228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1195 21 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.045 3.75e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g1195 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1195 - - gmx:100799687 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1195 3 12727476 12729228 Vra6g0577 6 5115109 5116733 PCT