Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1194 ATGGCCAGCCCAGATACACGACCATTCACTTGGCACTACACAGAAATCGATGACAGAGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTTTCTATTATCCTTCTCGTCACTGTTCTCTTCATATACACGCGCTGGGTTTGTCGCTACCAGGGGCTTCTTCCCACCACAGCGTTTTCCGCCGCTACCCACGCGCCGTCACTCCCGCAGTCTCAGGGACTGGACCCCGCAACCCTCAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGAAAGCTCGTGGGACGAAACGGAGTGTTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGCGACCATTATTTCCATTGTGAATGTGTTGATAGGTGGCTCACTCACCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCTTTCCCAAAGATTTTGATTCAGGAACCACCTCTCAGAATTGATTTTCAGTTCTAG 525 0.52 MASPDTRPFTWHYTEIDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGLLPTTAFSAATHAPSLPQSQGLDPATLKKLPIILHHAPSDRDESSWDETECCICLGEFRDGEKVKVLPACDHYFHCECVDRWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1194 174 SMART ring_2 107 148 IPR001841 -
Vra3g1194 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vra3g1194 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 164 IPR044675 -
Vra3g1194 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 155 IPR013083 -
Vra3g1194 174 SUPERFAMILY RING/U-box 98 155 - -
Vra3g1194 174 CDD RING-H2_PA-TM-RING 106 149 - -
Vra3g1194 174 PANTHER RING-H2 FINGER PROTEIN ATL66 3 164 - -
Vra3g1194 174 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1194 Vra-Chr3 12717848 12719044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1194 11 157 C3H Transcription Factor Family AT3G11110 44.000 1.00e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1194 - - gmx:100803278 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1194 3 12717848 12719044 Vra6g0575 6 5054207 5055268 PCT