Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1193 ATGTTATGCTTCCTTAGTGAAGTTTTGATGGACGAAAGGAGACTGAATATAATCTCTGCTATATCAGTGATTGCACTGGTTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGGCTTCTTCCTTATATTTGGTGCCGGTGTTGCTGTTATTGTTGCAGTCTTTGCTTATGTTCTCATCAGCATAAGGTTCAACCGCAGGAGGAGACTATTGGAGTCACAGTTGAAATCTGAAGGCCGAGAACTTCGCATGGAGTACAGTTTCTTGAAGAAAATTGCCGGCGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACAGATGGGTTTCAGGCACTGATTGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAATGATGGCACTTCGGTTGCCGTGAAACGAATCGATGGAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCAATAGCTAGTGTGCACCATGTGAACCTGGTGAGGTTGTTGGGCTACTGTAATGCTCCGACAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCTTTGGACTGTTGGATTTTTCCCAAAAGGTTATCTCAGAGGCGCCTTGGTGGGTGCTTGCCGTGGAATTTAAGGTACAAAGTTGCCATTGATGTTGCGAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAAGATCTTGCACCTTGACGTAAAGCCAGAAAATATACTGTTGGACGAGAATTATAGAGCAGTTGTTTCAGATTTTGGTTTGGCAAAGCTTGTTGGCAAGGATGAAAGCCAAAAGGTTGTGTCTGCCATTAGAGGAACAAGAGGGTACTTGGCACCTGAGTGGCTCTTAGAGCAAGGTATTTCGGATAAGACAGACATATATAGTTATGGGATGGTTCTTTTAGAGATTATTGGAGGCAGAAAAAACGTTTGCTTCGTGGATGATGTAAAGTCGAAGTCCAAAAGAAAATGCCGGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAAGTCATGGAAATTGTTGATCCTAGGTTGTTGGAAGGTGGAGGTGTTGATGAGAAGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAAGAGAAGCCAAGATCAAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACCAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGACAGTGCAACAGATAGCAGTAGCTTGCAAAGGTTGGACTTCATGTCGAATCCAAGAATACAAAGCGATGTGGAGTGTTCATCTACCTACTCCCATGCTACCACTGTTTTGTCTGGAAGATAG 1380 0.4391 MLCFLSEVLMDERRLNIISAISVIALVILIIVARVTLKLSKGFFLIFGAGVAVIVAVFAYVLISIRFNRRRRLLESQLKSEGRELRMEYSFLKKIAGVPIKFRYKELEEATDGFQALIGRGASASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYEYVSNGSLDCWIFPKRLSQRRLGGCLPWNLRYKVAIDVAKGLAYLHHDCRSKILHLDVKPENILLDENYRAVVSDFGLAKLVGKDESQKVVSAIRGTRGYLAPEWLLEQGISDKTDIYSYGMVLLEIIGGRKNVCFVDDVKSKSKRKCRYFPKIVNEKVREGKVMEIVDPRLLEGGGVDEKQVKTLVYVALWCVQEKPRSRPSMAQVVDMLEGRVRVELPPDTRMVLVDFLCVDDSATDSSSLQRLDFMSNPRIQSDVECSSTYSHATTVLSGR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1193 459 Gene3D Transferase(Phosphotransferase) domain 1 188 404 - -
Vra3g1193 459 ProSiteProfiles Protein kinase domain profile. 112 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1193 459 Pfam Protein kinase domain 117 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1193 459 SUPERFAMILY Protein kinase-like (PK-like) 93 397 IPR011009 -
Vra3g1193 459 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 10 459 - -
Vra3g1193 459 Gene3D Phosphorylase Kinase; domain 1 75 187 - -
Vra3g1193 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vra3g1193 459 PANTHER RECEPTOR-LIKE KINASE 10 459 - -
Vra3g1193 459 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1193 459 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1193 Vra-Chr3 12696004 12697655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1193 10 408 Receptor kinase-like Gene Family AT5G20050 63.682 3.34e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra3g1193 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1193 - - vra:106757544 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2219 7 42235007 42236667 Vra3g1193 3 12696004 12697655 PCT