Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1190 ATGTCTTCCATGGCCTCCACCAACCGAGACGAATCCTCCGACAACGACAGCAACTGTTCCTCGGTAACCGCACCGGACTCCTCTCGCAGCTGGCTCAGCACCTTTAGCTTCCGCCGCTCCAACCGCACCTCCCTGTCCCTCTCCACCGCCGACACCACCTCAAGGGCTGCATGCGAGGCCATTCGCCGCCTCCGCCTCCACACCGGAGCCATCGGCCTCGACCACTTCCGTCTTCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCGGTGGTGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGATAGAGAGGCGCTTGCCATACGGAAAAAGCTTCACCGAGCGGAGATGGAGAAGGAGATTCTGGCCATGATGGACCACCCCTTCTTGCCTACTCTATACGCTGCGTTCGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGCGGAGACCTGTTCTCCGCTCGCCAACGCCTCCCCGAAAAACGCTTTACCATCTCATCAACTAAGTTTTATGCAGCGGAGACACTGGTGGCACTGGAGTATCTTCACATGAAGGGCATAGTGTACAGGGACTTGAAGCCGGAGAATGTGCTGGTGAGGGAGGACGGACACATTATGCTATCGGATTTTGATCTGTGTCTGAGATGCGAGGTGGTTCCAAAGCTGTTGAGAAGCAAAACCAGATCAGAAGGCAGTGCGAAGACAAGAACATCATCATGTGCTGCCCCAATGCAATCATGTTTCTCTGGCTCAAGCAAGAGAAAGAAGAAGGTGACAACAGTTATAAGGGAAAATGTGGAGGTGTGTGAGGTTGACACAGAGATGGTGGCAGAGCCCATGAATGCAAGGTCGAAGTCATTTGTGGGAACCCATGAGTACTTGGCACCCGAAGTGATTTCTGGGCAAGGACATGGTAGTGCAGTGGATTGGTGGACTTATGGGGTTTTCTTGTATGAAATGTTGTACGGGAGAACACCCTTCAAAGGTGAGAACAACGAGAAAACACTGACCAACATTCTGAAGCAGCCCTTGACTTTCCCTAGAATTGCAGTGAGTAGCAGCAAGGAGTATGAAGAGACGGTGAAGCTTCAAGACCTCATCAGCAAGCTCTTGGTCAAGAACCCAAAGAAGAGAATCGGCTGCTGCATGGGCTCGGTTGAGATCAAGAGGCACCACTTCTTCAAGGGGTTCAACTGGGCTCTGATTAGATCAGTTAAACCACCTGATTTCCATGCTGATTTCAACAACATTAGGCGTAGAGTTTTGTTACAGAAACTAAGCAACAAAGACAAGGATCAACCCTTTCAGATCACTCATCGTTTTGACTACTTCTGA 1380 0.521 MSSMASTNRDESSDNDSNCSSVTAPDSSRSWLSTFSFRRSNRTSLSLSTADTTSRAACEAIRRLRLHTGAIGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLHRAEMEKEILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSARQRLPEKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLVREDGHIMLSDFDLCLRCEVVPKLLRSKTRSEGSAKTRTSSCAAPMQSCFSGSSKRKKKVTTVIRENVEVCEVDTEMVAEPMNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGVFLYEMLYGRTPFKGENNEKTLTNILKQPLTFPRIAVSSSKEYEETVKLQDLISKLLVKNPKKRIGCCMGSVEIKRHHFFKGFNWALIRSVKPPDFHADFNNIRRRVLLQKLSNKDKDQPFQITHRFDYF* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1190 459 SUPERFAMILY Protein kinase-like (PK-like) 61 430 IPR011009 -
Vra3g1190 459 Gene3D Transferase(Phosphotransferase) domain 1 161 230 - -
Vra3g1190 459 Gene3D Transferase(Phosphotransferase) domain 1 280 423 - -
Vra3g1190 459 Gene3D Phosphorylase Kinase; domain 1 74 160 - -
Vra3g1190 459 PANTHER FLIPPASE KINASE 1-RELATED 4 459 - -
Vra3g1190 459 SMART serkin_6 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1190 459 Pfam Protein kinase domain 299 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1190 459 Pfam Protein kinase domain 77 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1190 459 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g1190 459 CDD STKc_phototropin_like 74 423 - -
Vra3g1190 459 ProSiteProfiles Protein kinase domain profile. 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1190 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vra3g1190 459 PANTHER PROTEIN KINASE PINOID 2 4 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1190 Vra-Chr3 12631966 12633925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1190 14 459 AGC Kinase Gene Family AT2G26700 55.278 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra3g1190 Pkinase 2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1190 K08286 - gmx:100787216 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2224 7 42278109 42280186 Vra3g1190 3 12631966 12633925 PCT