Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1183 ATGAGCCACCCCAAGGAGGAATCACCGTCGGCGGTGCCTCTGCTTCGAAGCACCGAAAGAGATGACGGGTCCGGGTCATGGTCAGGGTCAAAGGCATCGCTTAGTGGTTCTGTGTTCAATTTATCTACAACGATCATCGGTGCTGGGATCATGGCCTTGCCGGCGGCCATGAAAGTTGTGGGTGTGAGTGTGGGCGTTGGTGCCATCATCTTCCTGGCCTTCCTCACGTTCACCTCTCTCGAGATTCTTCTCAGATTCAGCAGAGCCGCCAAGGCCACCACCTACGCCCACCTCATGGGGGATGCTTTTGGGAGCTCCGGAACCCTGCTCTTTCACGTGGCGGTGCTTCTCAACAACTTTGGGATACTTGTTGTTTACGTCATCATAATTGGTGATGTCTTGTCTGGAACATCTTCCAGTGGAGTCCATCATTTTGGGGTGCTTGAAGGCTGGTTCGGCCAGTGCTTCTGGACAACCCGTACTTTCGTTCTGCTTCTCGCAACTCTCTTCGTATTTGCTCCATTGGCCTTCTTTAAGAGGATAGATTCGTTGAGACATAGTTCTGCTTTAGCAGTGGCTCTGGCCATTGTGTTTCTACTCATAACTGCGGGAATCACGTTCTTCAAATTGTTTAATGGCAGCTTAGCCAGTCCCAGGATGCTTCCTAATATTACTGATGTTTCATCCATATGGAATCTCTTTACTGCCGCTCCAGTTCTTGTGACGGCATTTGTTTGTCACTACAATGTGCATACAATCGAAAATGAATTAGGAGACCCTTCCTTGATGCAACCGGTTATACGTGCATCACTGGTTCTGTGTTCTAGTATTTATATTCTTACAGCATTATTTGGATTTCTCCTATTTGGTGAGTCAACACTTGATGATGTGCTGGCCAACTTTGATACTGATCTGGGTATCCCTTATAGCAGTCTACTCAATGACATTGTTCGTATCAGCTACGCCCTCCACCTCATGCTTGTTTTCCCAGTTATCTTCTTCTCACTGCGCTTCAATTTGGACGATCTCATCTTTCCTTCAGCTAGGTCCTTGGATTTAGATCATCGTAGGTTTGTCTTGATCACCATTGGACTCATCACTTTAATATATGTGGCTGCAAATTTTTTACCTACTATCTGGGATGTCTTTCAATTCACTGGAGCTACTGCCACCGTTTGCCTTGGGTTTATTTTCCCTGCTGCAATTTCTATCAGGGATCCTCATGGGATTTCAACAAAGAAGGACAAGGTTTTATCCATTGTCATGATTTTTCTTGCTGTGTTCTCAAATGTTGTGGCTATATACAGTAATGCTGAATCTTTGTTCAGAAAACGTGTGGATCCTCAGCAATGA 1353 0.459 MSHPKEESPSAVPLLRSTERDDGSGSWSGSKASLSGSVFNLSTTIIGAGIMALPAAMKVVGVSVGVGAIIFLAFLTFTSLEILLRFSRAAKATTYAHLMGDAFGSSGTLLFHVAVLLNNFGILVVYVIIIGDVLSGTSSSGVHHFGVLEGWFGQCFWTTRTFVLLLATLFVFAPLAFFKRIDSLRHSSALAVALAIVFLLITAGITFFKLFNGSLASPRMLPNITDVSSIWNLFTAAPVLVTAFVCHYNVHTIENELGDPSLMQPVIRASLVLCSSIYILTALFGFLLFGESTLDDVLANFDTDLGIPYSSLLNDIVRISYALHLMLVFPVIFFSLRFNLDDLIFPSARSLDLDHRRFVLITIGLITLIYVAANFLPTIWDVFQFTGATATVCLGFIFPAAISIRDPHGISTKKDKVLSIVMIFLAVFSNVVAIYSNAESLFRKRVDPQQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1183 450 MobiDBLite consensus disorder prediction 1 32 - -
Vra3g1183 450 PANTHER AMINO ACID TRANSPORTER 8 448 - -
Vra3g1183 450 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 8 448 - -
Vra3g1183 450 Pfam Transmembrane amino acid transporter protein 32 438 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1183 Vra-Chr3 12533902 12537212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1183 4 450 Amino Acid or Auxin Permease AAAP Family AT3G30390 60.265 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1183 K14207 - gmx:100778699 738.799