Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1168 ATGGTGCAAACAAGGAAGTTCCGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCAGAAATTCGCCACCCACTTCTCAAAAGGAGGGTGTGGCTGGGTACGTTTGAAACAGCAGAAGAAGCAGCACGAGCATACGATCAAGCTGCGATTCTCATGAGTGGACGAAACGCAAAAACCAATTTTCCAATGCTTCAAACTCCAGAGGGTGACCCAAAGACGCTAACCGCCACGCACGAAACCCCATCAACCTCAAAGGAACTGGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCTTCTCCTTCCATGACTTGCTTGAGACTGGACCCAGAGAACTCCCACATCGGCGTGTGGCAGAAGCGCGCCGGTCACTGTTCTGACTCCAACTGGGTCATGATGGTTCCCTTCGGAAAGAAGGGTGATGAAGGTGGAAACAGTTCCAGGAGTGGTGGTTCCTTTGATTCGTTTTCTGAGTGTGATCAGACGGTGCAAGTTAGAAGACAGGAACATGTGAGAACAGAGATGGAGGAGGAAGAGAGAATCGCTATGCAGATGATAGAAGAACTCCTGAGCAGAAACTGGCCCACTAGCCCTTCTTCATGTAATAACAACATCTGTTAA 633 0.4961 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPMLQTPEGDPKTLTATHETPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGHCSDSNWVMMVPFGKKGDEGGNSSRSGGSFDSFSECDQTVQVRRQEHVRTEMEEEERIAMQMIEELLSRNWPTSPSSCNNNIC* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1168 210 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vra3g1168 210 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 202 - -
Vra3g1168 210 MobiDBLite consensus disorder prediction 144 164 - -
Vra3g1168 210 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vra3g1168 210 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vra3g1168 210 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vra3g1168 210 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vra3g1168 210 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vra3g1168 210 MobiDBLite consensus disorder prediction 149 164 - -
Vra3g1168 210 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Vra3g1168 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 202 - -
Vra3g1168 210 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1168 Vra-Chr3 12365819 12366635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1168 1 197 AP2-EREBP Transcription Factor Family AT1G15360 58.824 8.14e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g1168 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1168 - - gmx:100779921 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2254 7 42494403 42495656 Vra3g1168 3 12365819 12366635 PCT