LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra3g1154	ATGGCGCAACGGGGGTGGTCTGAAATATTGTGCATAGCCACTCTATTGTTATGCGGCGGTTTTGCAACCTCCTTTTCCACGGACCCTCCGTTGCTCCAACAACAAAAGGACCGGGTCGGTACGCTCCCGGGTCAAACCTTCAACGTTAGCTTCGCACACTACGCTGGGTACATCACCGTCGATGAAAATGCCGAGAGAACGCTATTCTACTGGTTCATCGAGGCCCTTGAAGATCCTCATTCCAAGCCCCTTCTTTTATGGCTCAATGGAGGACCTGGTTGTTCGTCCATTGCTTACGGACAGTCCGAGGAAATTGGACCCTTTCATATAAATCCAGATGGCAAGACTCTTCATCCCAATCCCTATTCTTGGAACCGAGTTGCCAACGTTATTTTTCTTGACACTCCTGTTGGGGTTGGATTTTCATATTCAATCAAGGGATCCGATCTGCTGATCAATGGCGATAACAGGACAGCTGAGGACAATTTAGGATTTCTGCTGAAGTGGTTTGAGCGGTTCCCTCAATACAAAAGAAACGACTTTTTAATTGTTGGTGAGAGCTATGGAGGGCATTACGTTCCTCAACTTAGCCAAGTTATTGTTAAGTACAACTCAGCTAGTAAAGAAAATGCTATAAATCTGAAAGGTTTCATGGTAGGAAATGCTCTGACGGATGATTATCATGATCAATTAGGGATGTTCGAGTTTATGTGGTCAAGTGGTTTGATTTCGGATCAAACATACAAGCTTTTGAACCAACTTTGTGATTTTCAATCAGTTGAACACCCCTCACATGCTTGTGATAAAATTTGGGATATTGCTTATAAAGAACTTGGATATATAGACCCATACAGTCTGTATACACCACCGTGCCATGGCAATGTTAGTCAGCTAAGTGGGCTGGTGAGAAGAAAGAATAGAATTGGTAGACTCGGTCTCAATGCACCATATGATCCATGCACCGAAAGTCACTCCACTGCATACTTCAATCGACCTGAGGTCCAAACAGCTCTTCATGTTGATCTAGATCATAAGCCTGCTACATGGGAGACCTGCAGTGATGTGGTAAATTCAAACTGGAAGGATTCTCCAATAACAGTGCTCGATATTTATCATGAACTTATTGACGTGGGTTTGAAGATATGGGTGTACAGTGGTAATACGGACTCGGTGATACCTGTCACGTCTACTCGCTATAGCATAAATGCTCTGAAGCTACCTACCGCGAGTCCTTGGCGTGCATGGTATGATGATGGAGAGGTAGGAGGATGGACCCAAGAATATGATGGGCTTACGTTTGTGGTTGTAAGGGGTGCAGGGCATGAAGTTCCTTTGCATAAACCAAAACTTGCTCTAACACTCTTCCAGAACTTCTTAGCAGGAACATCAATGCCTGATCTTCAGCTTCTCAGTGCCTCTTGA	1422	0.4451	MAQRGWSEILCIATLLLCGGFATSFSTDPPLLQQQKDRVGTLPGQTFNVSFAHYAGYITVDENAERTLFYWFIEALEDPHSKPLLLWLNGGPGCSSIAYGQSEEIGPFHINPDGKTLHPNPYSWNRVANVIFLDTPVGVGFSYSIKGSDLLINGDNRTAEDNLGFLLKWFERFPQYKRNDFLIVGESYGGHYVPQLSQVIVKYNSASKENAINLKGFMVGNALTDDYHDQLGMFEFMWSSGLISDQTYKLLNQLCDFQSVEHPSHACDKIWDIAYKELGYIDPYSLYTPPCHGNVSQLSGLVRRKNRIGRLGLNAPYDPCTESHSTAYFNRPEVQTALHVDLDHKPATWETCSDVVNSNWKDSPITVLDIYHELIDVGLKIWVYSGNTDSVIPVTSTRYSINALKLPTASPWRAWYDDGEVGGWTQEYDGLTFVVVRGAGHEVPLHKPKLALTLFQNFLAGTSMPDLQLLSAS*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra3g1154	473	Gene3D	-	320	358	-	-
	Vra3g1154	473	Gene3D	-	367	461	-	-
	Vra3g1154	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	120	132	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	133	143	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	169	194	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	431	444	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	10	467	-	-
	Vra3g1154	473	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	10	467	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	Pfam	Serine carboxypeptidase	43	460	IPR001563	GO:0004185\|GO:0006508
	Vra3g1154	473	ProSitePatterns	Serine carboxypeptidases, serine active site.	183	190	IPR018202	GO:0004185
	Vra3g1154	473	SUPERFAMILY	alpha/beta-Hydrolases	39	464	IPR029058	-
	Vra3g1154	473	ProSitePatterns	Serine carboxypeptidases, histidine active site.	431	448	IPR033124	GO:0004185
	Vra3g1154	473	Gene3D	alpha/beta hydrolase	33	293	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra3g1154	Vra-Chr3	12181329	12186538	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra3g1154	330	464	Calmodulin-binding Proteins	AT2G22960	25.000	1.22e-09	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra3g1154	K16297		-	gmx:100805227	798.505