Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1150 ATGGCTTTGGGAGTGTTCGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAACACTTATCATCCCAGCAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGACTTAGCATCCTCCCAGGTCTACAACTTTTCTGATTCAGTCTGCTCATTTCGAGGGGTTTCATGTGATGCCAAGAAAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGGACCTTTCTGGTTCTATTCCAGACACCACTATAGGTAAGCTCACCAAGCTTCGATCTTTGGACCTTAGCCACAACAAAATCACCGACTTGCCTCCTGATTTCTGGAGTTTTAGCTCGCTCAACAACCTTAACCTCTCTGGCAATAAGATTTCTGGTTCATTGACTAACAACATAGGAAACTTTGGTTTGCTAGAAGTGTTGGACTTGTCCGGCAACAATTTCTCTGGGCCAATTCCTGAAGCGATCAGCTCCCTCGTGAGTCTGAAAGTCATCAAACTTGATCACAACAGGTTTGAGCAAAGAATACCTTCTGGGATTCTTAAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTTCCGGATGATTTTGGTGCTGCTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAACGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTGAATATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGCTTGAGGTCATGGATATTAGAAGAAACCAATTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCCAATTACAATTGGTCTTATTTGGTTTATCTGGATTTGTCAGAGAATCTGCTGGATGGAGAAATTTCCCAAAATTTGATTGAATCCAAGAACCTAAAACACCTTAATATTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGGTTGAAATGCTATCTGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCTCAACTTCGAAATTTGAGTACACTTGATGTTTCTATGAATCATCTAACAGGGAAAATCCCTTCACTAAAAAATAGAAACCTCCGAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATATCCCATCATCAGTCATAGAGAAACTTCCTTCAATGCAGAAATACAACTTCTCTTATAATAACTTATCCTTCTGTGCTTTGGAAATCAAATCAGCCATCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCCATTGCTGCAAACCCAAGTCTTCTGAGAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTTGCTCTTGCATTGACCTTCTCAATGATCTGCTTGATTGCCGGGCTTATGCTTCTAGCTTTTTGTTGCCTTAAGAAAACAAAACCACGGCCTGTTAAACAACCTTCATACAATGAAGTGCATAACATGTCAGGACCCTTTTCATTCCACACTGATTCAACCACATGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGACAAGCCACTATTAAATATCACATTCGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTCGGGCCAGTTTATAGAGGATTTCTACCAGGTGGTATTCACGTAGCAGTAAAAGTTCTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCTAATCTTGTCCCTCTAACAGGATATTGTGTAGCTGGGGATCAGAGGATTGCTATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTCTATGACTTGCCACTTGGTGTACTTCAAAGTACAGATGATTGGAGCACAGATACATGGGAAGAAGATGTGAGTAATGGGATTGAAAATGCTGGATCAGAAGGAGGTCTCACAACTTGGAGATTTCGCCATAAAATCGCACTTGGCACTGCTCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTATATTTGGATTACAACTTGGAGCCAAGACTCTCTGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGGTTGGATGAAGAGAGTGCACTTTGTTCAGCTGGCTATGTTCCACCAGAGTTTTCTCAAGAAGAATTTTGCACCTCAACTCCAAAATCTGATGTGTATTGTTTTGGGGTTGTTCTCTTTGAGCTGCTATCTGGGAAGAAACCAGTTGCAGATGATTATCCTGATGTAAAAGAAGGAACTTTGGTTAGCTGGGTGAGGGGGTTAGTGAGAGAGAACAAAGGTTCAAGAGCCATTGATCCAAAAATTCGTTATACTGGAGCAGAAGAGCAAATGGAAGAGGCCCTTAAGATTGCTTATCTCTGCACTGCTGATCTTCCTTCCAAGCGACCCAGCATGCAGCAGGTTGTTGGACTTCTTAAAGACATCGAACCTTCTAATTAG 2562 0.413 MALGVFGSVLVLTLFFKHLSSQQPNTDDFFVSEFLKKMDLASSQVYNFSDSVCSFRGVSCDAKKEHVIGLVFSGMDLSGSIPDTTIGKLTKLRSLDLSHNKITDLPPDFWSFSSLNNLNLSGNKISGSLTNNIGNFGLLEVLDLSGNNFSGPIPEAISSLVSLKVIKLDHNRFEQRIPSGILKCRSLVSIDLSSNQLSGTVPDDFGAAFPNLITLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRLEVMDIRRNQFEGRISQVHSISNYNWSYLVYLDLSENLLDGEISQNLIESKNLKHLNIAHNRFSRQKFPKVEMLSGLEYLNLSKTSLIGYIPAEISQLRNLSTLDVSMNHLTGKIPSLKNRNLRVLDLSNNNLSGDIPSSVIEKLPSMQKYNFSYNNLSFCALEIKSAIIQRAFYGSVNSCPIAANPSLLRKRATENKGMKLALALTFSMICLIAGLMLLAFCCLKKTKPRPVKQPSYNEVHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTDDWSTDTWEEDVSNGIENAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEESALCSAGYVPPEFSQEEFCTSTPKSDVYCFGVVLFELLSGKKPVADDYPDVKEGTLVSWVRGLVRENKGSRAIDPKIRYTGAEEQMEEALKIAYLCTADLPSKRPSMQQVVGLLKDIEPSN* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1150 853 PRINTS Leucine-rich repeat signature 92 105 - -
Vra3g1150 853 PRINTS Leucine-rich repeat signature 354 367 - -
Vra3g1150 853 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Vra3g1150 853 Gene3D Ribonuclease Inhibitor 327 427 IPR032675 -
Vra3g1150 853 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 851 - -
Vra3g1150 853 SUPERFAMILY L domain-like 42 273 - -
Vra3g1150 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vra3g1150 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 851 - -
Vra3g1150 853 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Vra3g1150 853 Gene3D Ribonuclease Inhibitor 253 326 IPR032675 -
Vra3g1150 853 SUPERFAMILY Protein kinase-like (PK-like) 532 845 IPR011009 -
Vra3g1150 853 Pfam Protein tyrosine and serine/threonine kinase 551 844 IPR001245 GO:0004672|GO:0006468
Vra3g1150 853 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Vra3g1150 853 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Vra3g1150 853 Gene3D Ribonuclease Inhibitor 183 252 IPR032675 -
Vra3g1150 853 ProSiteProfiles Protein kinase domain profile. 547 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1150 853 Gene3D Transferase(Phosphotransferase) domain 1 653 853 - -
Vra3g1150 853 SMART LRR_typ_2 89 111 IPR003591 -
Vra3g1150 853 SMART LRR_typ_2 330 354 IPR003591 -
Vra3g1150 853 SMART LRR_typ_2 377 400 IPR003591 -
Vra3g1150 853 SMART LRR_typ_2 160 184 IPR003591 -
Vra3g1150 853 SMART LRR_typ_2 209 232 IPR003591 -
Vra3g1150 853 SUPERFAMILY L domain-like 229 415 - -
Vra3g1150 853 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Vra3g1150 853 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Vra3g1150 853 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1150 Vra-Chr3 12118426 12121479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1150 70 849 Receptor kinase-like Gene Family AT5G07280 31.862 4.22e-111 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vra3g1150 PK_Tyr_Ser-Thr 4.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1150 - - gmx:100807051 1464.51