Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1145 ATGCCAGATTTAGGGAACCTTGTTCTCTCTTCCACTCTCACTCTCTCCCACTGCTCCTCCGATGTCGCCGACGCTCCCGTCAAAACCCTACCCGATGCCTTCGCTTCCGAGCCCGCCTTCGAGCCTCGGGTTTTGAAACGCACTCGCGGCTCCCTGGATCGGGTCAAGAAGCCCGCTTCCGACAAAGCTTTTCAGGATCGCCTCAAAGATCCCTTCTCTCATCCGTTTCTTGTTGGCGCTCCCAAATTGTGGGAGTGTTGTTTTTGCCGCCATTTTATCTACCCCGGGGAGGAGCTGCTGTGTTCGGTTCGCGGATGCGACGCTCGGTGCCATTCTGAATGTGCGAAAGATTCTGGTGGAGCTACCAGTCTGAAAAAGTACAAGTGTCCACAGCATGTATGCTTCATTTGCAAGCAAAAAAAGCAGTTTAAGTGTGTACGTTGTAAAATTGCGTTCCATAATAAATGTGCACCGTGGCCAGATGAAGTGTTGCCGCTAAAAGATCATCCTGGGCTAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGGAAGCCTGATGCTTCGACAAGTGACATTTCGGAAGTATTCTGTCGCTTGCCTCTTCCGTTTATCAGTGAGGAGTTTAAGATTGATTCCACCTGGAAAGACATGGACAGTAAGATGGAGCAGCCACCACCATACGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTAATGTGGATGATGGTGCAGGGTGCACCAGTTGCAGCTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGTTGCTCAAAAGCGTGTGGATGCTCTGAAAATTGCAACAATCGTCCATTTCGCAAGGAGAAAAAGATCAAGATAGTCAAGACTGAGCATTGTGGATGGGGAGTGGAGGCCGCTGAAACCATTGATAAAGGTGGATTTATAGTTGAGTATATTGGAGAAGTAATTGACGATGCTTTATGTGAGAAGAGGCTCTGGGACATGAAATACATGGGTGTACAAAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATTGATGCAACTTTCAAAGGGAATACTTCACGTTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAATGGCAAGTAGATGGTGAAACACGTGTGGGTGTATTTGCTGCTCGTTCAATAGAATCTGGAGAGCCATTAACATATGATTACAGATTCGTGCAATTTGGTCCAGAGGTTAAATGCAACTGTGGTGCAGCAAATTGTCAAGGCTTTCTAGGGACAAAAAAGAAAATTGGCAAGCTGGATTTCTGTTGGGGCTCTAAACGCAAGCGAACATCATCAAATGCTTGCATTACGCTGGTAACAACTGTATGA 1389 0.4586 MPDLGNLVLSSTLTLSHCSSDVADAPVKTLPDAFASEPAFEPRVLKRTRGSLDRVKKPASDKAFQDRLKDPFSHPFLVGAPKLWECCFCRHFIYPGEELLCSVRGCDARCHSECAKDSGGATSLKKYKCPQHVCFICKQKKQFKCVRCKIAFHNKCAPWPDEVLPLKDHPGLAVCWRHPSDWRLDRKPDASTSDISEVFCRLPLPFISEEFKIDSTWKDMDSKMEQPPPYVHIRRNIYLVKKKRSNVDDGAGCTSCSSTCSDDCVCRVQCISCSKACGCSENCNNRPFRKEKKIKIVKTEHCGWGVEAAETIDKGGFIVEYIGEVIDDALCEKRLWDMKYMGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIESGEPLTYDYRFVQFGPEVKCNCGAANCQGFLGTKKKIGKLDFCWGSKRKRTSSNACITLVTTV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1145 462 ProSiteProfiles Post-SET domain profile. 415 431 IPR003616 -
Vra3g1145 462 SUPERFAMILY SET domain 212 421 IPR046341 -
Vra3g1145 462 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 462 IPR025787 -
Vra3g1145 462 ProSiteProfiles AWS domain profile. 249 292 IPR006560 GO:0005634|GO:0018024
Vra3g1145 462 SMART PostSET_3 415 431 IPR003616 -
Vra3g1145 462 Pfam SET domain 303 408 IPR001214 GO:0005515
Vra3g1145 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 181 IPR013083 -
Vra3g1145 462 SMART set_7 292 415 IPR001214 GO:0005515
Vra3g1145 462 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 55 457 - -
Vra3g1145 462 CDD SET_ASHR3-like 293 431 - -
Vra3g1145 462 ProSiteProfiles SET domain profile. 292 409 IPR001214 GO:0005515
Vra3g1145 462 Gene3D SET domain 203 443 IPR046341 -
Vra3g1145 462 PANTHER SET DOMAIN PROTEINS 55 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1145 Vra-Chr3 12056370 12071917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1145 273 430 C2H2 Transcription Factor Family AT2G23740 36.313 6.11e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra3g1145 SET 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1145 - - gmx:100791481 809.675