Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1144 ATGGAAGAGGAAGAAGCGATGCAGCAACCGCTCACAGACTCGTCGCTAACCACCCATTCATTAACTTCCGATGAAGAGCAACTCCACTCAGAAACCCTATCTCTGCATTCTTCTGCTCATATGCAAAGAAGCTCTACCGCAAGTGAGCTTGGCCAAGATGAGAGTAAGGAGTCAGCACAGCATTCTGATGAAGAAACTATTGTAAAGGAGACAGTAGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGATGTCTGTTTGTTCAACTTCATCGTCTAAACTATCACCAACTTCTGTATCACAGTATTTATCATCTGCCCCTAGTTCAAGTGTACCACAACAGAGACCATCTCCCAAGGCTGTAAAAGTGCAAAAAAGGGACAAAGGAACTCCTTCTGGTGATACAACCTTGTCTTCAGTTTCTGTTTCAAGGTCATCTGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGTTATTACAGATGTACCCATTCAAATTGTAGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGATATGTGATAGAGATTGTTTACAAAAGTCAACATAGTCATGATCCCCCACACATAGTTGATTCTACCAAGGAAAGTAAATTCCTGCCTTACGGTGAACCTAAAATAAAATACAGTGTTCCAAAGCAGTCTAGCAGAGTTCAAATTGATTCTGATCCATCTTCTCCAAAAAAACCTTTATATGAATCACCTTGCAGTGCCAATAAAAATCAAGAGAACTCATCCTATGATGAGAATGACAAAGTTTTGTTGAAAAAAGAGCATGTTAATGACCCTGAGCCAAAAAGAAGACTGAACAAAGGTGATTTAACATGCTTGGATTCAGCAATAAAACCTGGAAAGAAACCAAAGTTTGTTGTACATGCAGCAGAGGATATGGGGATATCAAGTGATGGATACCGATGGCGCAAATATGGACAAAAATTGGTGAAGGGAAACCCACATTTCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTTCGAAAGCACATTGAGACTGCTGTGGATAACGCAAAAGCTGTGATTATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGCCCAAGAAAAGACAGGGTCCACCAAGGGCTTCCCTTGTGGCTGCTGCAGCTCCTGCTTCAATGAAAAATTTGCACTTCAAAAAAAGTGGTTTGGTACAAAAGCAGGAAACTTCTTCTGCTCAATGCTCAGAGGACACAGAAGATGAAGCGTTGGACCTTGGTGGTGAGAAAGCAATCGAATCAGCCCGAACTCTTCTAAGTATTGGCTTTGAAATTTAA 1359 0.4135 MEEEEAMQQPLTDSSLTTHSLTSDEEQLHSETLSLHSSAHMQRSSTASELGQDESKESAQHSDEETIVKETVEAPQKQTENQLQMSVCSTSSSKLSPTSVSQYLSSAPSSSVPQQRPSPKAVKVQKRDKGTPSGDTTLSSVSVSRSSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCSAKKIKFCDHSGYVIEIVYKSQHSHDPPHIVDSTKESKFLPYGEPKIKYSVPKQSSRVQIDSDPSSPKKPLYESPCSANKNQENSSYDENDKVLLKKEHVNDPEPKRRLNKGDLTCLDSAIKPGKKPKFVVHAAEDMGISSDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNAKAVIITYKGVHDHDMPVPKKRQGPPRASLVAAAAPASMKNLHFKKSGLVQKQETSSAQCSEDTEDEALDLGGEKAIESARTLLSIGFEI* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1144 452 Pfam WRKY DNA -binding domain 321 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 Pfam WRKY DNA -binding domain 150 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 SUPERFAMILY WRKY DNA-binding domain 146 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 MobiDBLite consensus disorder prediction 32 53 - -
Vra3g1144 452 MobiDBLite consensus disorder prediction 54 71 - -
Vra3g1144 452 ProSiteProfiles WRKY domain profile. 314 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 MobiDBLite consensus disorder prediction 230 290 - -
Vra3g1144 452 MobiDBLite consensus disorder prediction 72 118 - -
Vra3g1144 452 MobiDBLite consensus disorder prediction 131 152 - -
Vra3g1144 452 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 22 451 - -
Vra3g1144 452 MobiDBLite consensus disorder prediction 8 23 - -
Vra3g1144 452 MobiDBLite consensus disorder prediction 1 152 - -
Vra3g1144 452 ProSiteProfiles WRKY domain profile. 143 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 451 IPR044810 GO:0003700
Vra3g1144 452 SUPERFAMILY WRKY DNA-binding domain 314 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 SMART WRKY_cls 319 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 SMART WRKY_cls 148 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 MobiDBLite consensus disorder prediction 264 290 - -
Vra3g1144 452 Gene3D WRKY domain 134 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g1144 452 Gene3D WRKY domain 304 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1144 Vra-Chr3 12050250 12053769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1144 20 452 WRKY Transcription Factor Family AT4G30935 47.380 1.46e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra3g1144 WRKY 1.6e-22 CL0274