Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1135 ATGGCTGTGGAAAATCAAAGGGATCATTTGGGGGATGAAGATGGGGGTGGTGACCGTTTTCCCGTGGGTATGCGTGTTCTTGCAGTGGATGACGACCCACTTTGTCTCAAAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGTTGAGGCTCTGAAAATGTTGAGGGAAAACAGAAACAAGTTTGACCTTGTAATCAGCGATGTGAATATGCCTGACATGGACGGATTTAAGCTCCTTGAGTTGGTAGGACTTGAAATGGACCTCCCTGTCATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGCAGGGTGTTACACATGGGGCTTGTGACTATTTACTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAGCATGTGGTCCGAAGAAAGAATTTTGATGGCAGGGATCAGAGCAAGGCTTCCAATGATGAAAAGGCTCTGAATATTGCTGGGGAAGGTAGTCTAAGCCTAAGATCAGAAAACAGTGCTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAGAGTGAGGAAGAAGACGATGATGGGGAAGGGAATGGAGATGATGATGACCCCTCAGCACAGAAGAAACCTCGTGTTGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTTGGCCTAGAAAAGGCTGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTTACCAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTTTATCTGAAAAAGGCAAACCATCAAGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACTTACGAATGGGTTCAATCGATGGATTTGGAGATTTTTGCACCGCTTCTGGTTCTGGAAGGATCTCAAACACTACATTACCATCATATGCATCTTCTGGAATTTTCAGTAGGCTGAATTCCCCAGCTGGATTGAACATGCGAGGAATCAGTTCTTCTACACTTATCCGTCCTGTTCAGACCCAAAACATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCAATTTTTTCTGCAAATCAGAGCTCAAGTTTGTTACAGGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGTTCAACCGGTTTATCGCAGCTAAGCCAAGTTGATTCAAGTGCATATACAGTTGCCTCTGGCTTCCCAGACAGTAGGGCTGCTACAGTTAATGGTCCAAACAATTCTCTATCATGTGGCTCAAATAATCATATAATCTTACAAGGAAATCCACAGCAAACACATGGCCCAGGAACATTTAGAAATCAGTCTTCTGTTAGATCAGCTTCCTTGAATGCAGAATCTTTTGGCATAGGTGGTTCTTCTAATATGTTGGATTATAATCGGTGCAACAAAAACTGGCAGAATGCGGCACAGCTATCCAAATTTCCGGCCAATTCCTCGCCATTGTGTGAGGCTTTCGGCAATGACCAACTGCCTCCCACTAGCATCAATGTTTCCAACTCAGGTACTCATATTGGCAACAGTCCGGTTGATTTTTCTTCCAGAATGGCAATGTCTGTTCCTTTGGAAGATGTACAGCCTTTAAGCTACGCACCACAACAAAGATGGGAAGAACATAAATTGGATTATGACCAAAACTTGAGTCGACCCTTCAATCCTGTAAATCCATATGCTTCTTCCAGTGCAGCAACAAGTTCTATGGGGCATGGCTTAAACCAAAATAACACAATTTGTAGCAATAGAATTAATGCATCTTTGGTTGGTCCATGCACTGATGTTGATAAATTCTCTTCTGACATTCCACTGAAGTCGAATGAAGCATACATTTTGGAGCAATTAAAGTCCCAAGAAGGATTTATGCAGAATACTTTTGGTACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAACAAAATGAGTTAACTTTGTTGGATGGAGAAATTGGATTTGATGCCTCCTACCCTGTTGGATCATGCAACTGA 2034 0.4258 MAVENQRDHLGDEDGGGDRFPVGMRVLAVDDDPLCLKVLENLLRKCQYQVTTTNQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDGRDQSKASNDEKALNIAGEGSLSLRSENSADQNKRLGKKRKDQSEEEDDDGEGNGDDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKANHQANMVAALGGSDSYLRMGSIDGFGDFCTASGSGRISNTTLPSYASSGIFSRLNSPAGLNMRGISSSTLIRPVQTQNINSSLNTLGNIQPSIFSANQSSSLLQGIPTSIELNQSKQSNCSTGLSQLSQVDSSAYTVASGFPDSRAATVNGPNNSLSCGSNNHIILQGNPQQTHGPGTFRNQSSVRSASLNAESFGIGGSSNMLDYNRCNKNWQNAAQLSKFPANSSPLCEAFGNDQLPPTSINVSNSGTHIGNSPVDFSSRMAMSVPLEDVQPLSYAPQQRWEEHKLDYDQNLSRPFNPVNPYASSSAATSSMGHGLNQNNTICSNRINASLVGPCTDVDKFSSDIPLKSNEAYILEQLKSQEGFMQNTFGTLDDIMGAMVKREQNELTLLDGEIGFDASYPVGSCN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1135 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Vra3g1135 677 PIRSF RR_ARR_type-B 1 677 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vra3g1135 677 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Vra3g1135 677 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vra3g1135 677 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Vra3g1135 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 657 - -
Vra3g1135 677 SMART REC_2 24 136 IPR001789 GO:0000160
Vra3g1135 677 MobiDBLite consensus disorder prediction 177 192 - -
Vra3g1135 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 657 IPR045279 GO:0009736
Vra3g1135 677 Gene3D - 207 269 - -
Vra3g1135 677 Gene3D - 23 159 - -
Vra3g1135 677 CDD REC_typeB_ARR-like 26 140 - -
Vra3g1135 677 SUPERFAMILY CheY-like 23 145 IPR011006 -
Vra3g1135 677 MobiDBLite consensus disorder prediction 147 211 - -
Vra3g1135 677 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vra3g1135 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1135 Vra-Chr3 11915194 11920109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1135 18 676 Response Regulator Gene Family AT2G25180 42.042 3.92e-133 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra3g1135 Response_reg 4.3e-26 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1135 K14491 - gmx:100776075 1131.32