Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1120 ATGCAGCTACACAAGGAAAATATCAAGCTTGAACAATGCGATATATGCGGGGCTCGTGGTTTGATGGAAAAAGTTGTTACTTGCTCTAAATGCAGTGTGATTCGACATGCTTATTGCATTCAAATTAATACCACAATAATTCCTAAAGACTGGCTTTGTGAGACTTGCCAACCCAAGCATGATTCAACTTCACCTCATAAAGTGAACCAGGAGTTCAGTTCGTGGGCTAGTAAAAGGAAACCATCTGTCAAAAGAGCCAAAGTGAAGTACCTTGACTTGGATGAAGTCATTAGACTTTCTTCTGCAAAGGCTTCTGGTGGATCCAAAAATGTTATTTCCAAGATTCCCTCCCTGACTGCAAAATCAAATCCTCCCATATTACCTCCTAAAGTACTTGGGAAGCTTCCAAGAAACAATGAAGTACTCAAGAAAACAATGACTAACCAACATGATTCTTGCTCATTGTTTAAAGGATCAACACAGGAGTGTATAGAAGAAAATCAGCAACCCTTTGGTGGACAGGTAGCTGGCAAAAATGTACAGGCACATGATCCTCAGAAAGAAAAGGCTACAAAAGATGCCCCTTTTGGAGGTTTATCAGCAACGAAATCTTTCGCTATTGTTGGTGGTGAACCTAGCGACCATGCTGAGTGTAACAGGTCTAATATGGAAAAGAGTGACCGAGTATTCAGAAAAACTTAA 702 0.4031 MQLHKENIKLEQCDICGARGLMEKVVTCSKCSVIRHAYCIQINTTIIPKDWLCETCQPKHDSTSPHKVNQEFSSWASKRKPSVKRAKVKYLDLDEVIRLSSAKASGGSKNVISKIPSLTAKSNPPILPPKVLGKLPRNNEVLKKTMTNQHDSCSLFKGSTQECIEENQQPFGGQVAGKNVQAHDPQKEKATKDAPFGGLSATKSFAIVGGEPSDHAECNRSNMEKSDRVFRKT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1120 233 MobiDBLite consensus disorder prediction 210 233 - -
Vra3g1120 233 MobiDBLite consensus disorder prediction 217 233 - -
Vra3g1120 233 PANTHER - 5 189 - -
Vra3g1120 233 PANTHER ZINC ION-BINDING PROTEIN 5 189 - -
Vra3g1120 233 SUPERFAMILY FYVE/PHD zinc finger 11 61 IPR011011 -
Vra3g1120 233 ProSiteProfiles Zinc finger PHD-type profile. 10 59 IPR019787 -
Vra3g1120 233 SMART PHD_3 12 57 IPR001965 -
Vra3g1120 233 MobiDBLite consensus disorder prediction 175 197 - -
Vra3g1120 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Vra3g1120 233 Pfam PHD-finger 13 59 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1120 Vra-Chr3 11643421 11652440 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra3g1120 PHD 2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1120 - - vra:106757527 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1120 3 11643421 11652440 Vra3g1120 3 11643421 11652440 ECH