Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1117 ATGCCAATGGCTGCTGTTCTGCGTCGCGAAGGGAGGCGTTTGACCCAACCGATCAACGCTCTCCATTCCTCTCTCATCTCTCAAGACCAAGCTCCTCATGGTTCGCGCTCCATTTCCACCCAAGTAGTGAGGAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTTCGAGCCGTTCAAACAAGAGCTGAAAATTCTCGTGGCCTCTGGCAACCATTCACTGCCCTTCTCGGTGACAATCCCAGTGCTGATGTTAAGAAGAACGTTGTTGTTACCGTTTCCTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCCGGGCCTGATAAAGAGACAAAATATGTCATACTGGGAGAGAAGGCTAAGGCTCAATTGGTACGTGACTCAAAGAAAGACATTGAGCTCTCCCTTACTGAATTGCAGAAGAATCCTCTGAATTATACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTAAGGATTGTTTTCAACAAATTTCATTCTGTTGTTTCATTTTTGCCAACAGTGTCAACTATACTATCTCCCGAGGTTATCGAGAGAGAGGCTGAATCAGGAGGAAAGCTTGGGGAACTAGATTCATATGAGATTGAAGGTGGCGAGACAAAATCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTCTCTTGTGTCATGTACAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCAGCCATGGACAGCTCTAGTAGGAACGCTGGGGACATGCTTGATCGTCTCACCCTCACTTATAACAGAACTCGTCAAGCATCTATCACCACAGAATTGATAGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 957 0.4525 MPMAAVLRREGRRLTQPINALHSSLISQDQAPHGSRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPSADVKKNVVVTVSSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLVRDSKKDIELSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFLPTVSTILSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1117 318 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 PRINTS ATP synthase gamma subunit signature 263 282 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 PRINTS ATP synthase gamma subunit signature 294 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 ProSitePatterns ATP synthase gamma subunit signature. 302 315 IPR023632 -
Vra3g1117 318 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 39 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 PANTHER BNAA05G10580D PROTEIN 4 317 - -
Vra3g1117 318 Hamap ATP synthase gamma chain [atpG]. 37 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 CDD F1-ATPase_gamma 39 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 Gene3D - 63 275 - -
Vra3g1117 318 PANTHER ATP SYNTHASE GAMMA CHAIN 4 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 Pfam ATP synthase 41 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vra3g1117 318 PIRSF ATP_synthase_gamma 6 316 - -
Vra3g1117 318 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 313 - -
Vra3g1117 318 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 40 316 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1117 17 316 Primary Pumps ATPases AT1G15700 30.878 1.60e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1117 K02136 - gmx:100813657 578.17