Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1103 ATGGAGCTCACTGAAGAACAACAACGGCAAGTTGAAGCGAACCGTGCGGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAGAGCGCAGCGAGAAGAACAATCTCATGGTGAAGGAGAAAAGACTACCAACCCCAACCCATGGCAGCTTTTCAAGTGCCAAAAGTTTCCTAAAGCTCAACCCCCGAAGTTCCTCGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATCACACCCATTCAGCTTCCTCCATTCCCCTTCCCCGGTCACCAGCATTGCCTCTCCACTCTAAACTCCATTCTCTCACATGTGATGCTTTCGCACTTCACGCAGACCACTGGAGGGGTGGAGGTATGCGTGTTCAAGCTCACGGAGTACCACGCCGTGGTCAGACAGTTGAAGGTGGAGGTGGAGGCGCTTCAGGTGGAGGAGATTCCCTGGGCGACGTTCAACGTGGTGGAGCGTCTCTCGCTTTCGGTAGCTTCTGGGCGGTGGACGCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCGTGATTGCGAAACTCCCGAGGACTCTCCTGGATGTGTTGCTCCCTTTCCAGCATGACGGACTGCGTTTCGCGTTGAGAAGAGGCGCTCGGTGTCTCATTGCCGATGATATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCGGGGTGTTTTTTGGATGAAGGTTCCATACTCGTGGTTTGTCCTGCTGTTTTGCGGTTCACGTGGGCGGAGGAATTGGAGCGCTGGCTTCCTTTATGTTTGCCTGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAAACCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTTAGAAAGAACATGCTTGAACTTCAATGGGCTCTTTTGATTGTTGATGAATCACATCACGTGCGATGTACGAAGAAAACAGAACCAGGAGAGTTTGTAGAAGTGCTGTATGAATTTGGTTTGAGGGAGGAGATTTATATTAGTGGGATAAGAAGATCTGATTGGGGTTTGATACAGGCTGTTCTTGATGTGGCTTCAAAAGTCAATCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGGCCTGGTTTGCTGGGGAAGACTAAATACGAATTTGCAAAAACTTATTGCAATTTAAAATATATCAAAGGCAATCAAGGAAAATATTTTGCGAATGGTGGGATTATGGTGCAGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAATGTGTTACTGAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCGAAACGTCGGCAAATTATAAGACTGTTGATAAAGAGATCGGATATTGTTGCTGCTAAAACTGCAATTGGGGTAATAAGTATTGATGCCACTGAAAGGGAAAGTGAAGACACAGCTTTGGAAAATTTGGATGAAACTGATGGCAAGCTGTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATAGTTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAGAGTTCTTGATGGAGTACAGGAGTTTGTATGCGAGAAAGGTATAAGTTTTGTGCGAATCGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTAGGTCGTCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCACAAAGCCCAACTCTAATGCTCCAGGTTCTGTTTGGAATACCACTTCATTGA 1875 0.4629 MELTEEQQRQVEANRAAAIAKRKAFLESRAQREEQSHGEGEKTTNPNPWQLFKCQKFPKAQPPKFLARLEICSPDSFSITPIQLPPFPFPGHQHCLSTLNSILSHVMLSHFTQTTGGVEVCVFKLTEYHAVVRQLKVEVEALQVEEIPWATFNVVERLSLSVASGRWTPVRPEHLADEEVERVIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFTWAEELERWLPLCLPADIHLVFGHQDNPIYLTRKPRVVVISYTMLHRLRKNMLELQWALLIVDESHHVRCTKKTEPGEFVEVLYEFGLREEIYISGIRRSDWGLIQAVLDVASKVNRIILLSGTPSLSRPGLLGKTKYEFAKTYCNLKYIKGNQGKYFANGGIMVQDYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAIGVISIDATERESEDTALENLDETDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHRVLDGVQEFVCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPTLMLQVLFGIPLH* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1103 624 Pfam SNF2-related domain 212 322 IPR000330 GO:0005524|GO:0140658
Vra3g1103 624 Gene3D - 170 396 IPR038718 -
Vra3g1103 624 SMART ultradead3 191 416 IPR014001 -
Vra3g1103 624 CDD SF2_C_SNF 507 616 - -
Vra3g1103 624 MobiDBLite consensus disorder prediction 25 40 - -
Vra3g1103 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 402 IPR027417 -
Vra3g1103 624 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 355 616 - -
Vra3g1103 624 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 326 - -
Vra3g1103 624 Gene3D - 424 619 IPR027417 -
Vra3g1103 624 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 355 616 - -
Vra3g1103 624 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 326 - -
Vra3g1103 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 617 IPR027417 -
Vra3g1103 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 393 IPR014001 -
Vra3g1103 624 MobiDBLite consensus disorder prediction 24 47 - -
Vra3g1103 624 Pfam Helicase conserved C-terminal domain 524 616 IPR001650 -
Vra3g1103 624 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1103 Vra-Chr3 11444562 11454257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1103 530 618 RAD5 or RAD16-like Gene Family AT1G11100 31.461 5.04e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra3g1103 SNF2_N 2.3e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1103 K25861 - vra:106757717 1214.91