Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g1100 | ATGGAAGAAGATCAAGAAGTGAAGCACTCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACATGTCACCAATGTTTCATCCGAGACAGAGAAAGTTTCGTCTTTCAACAACAACAATGGTGGAGATAGAGATAGAGATAGAGAGACGGGAATAATGGGTTCTGAAGGAGGAACTAGCAATGGAGGGTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTTGATGAGACTTTGTTGGTGTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTGATGGAGGATCAAGATTCGTGGACAGAAAATACCAATGCTAGCCAGAAGATGGTGTCGGATGATAGCCACTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTATCCTTTGTTTCTGAGGCAGAGCAAGAGCAGGAGCAGGAAGAGGTCGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAGTTCTGAGAACTCATTTCACTTTGAATCTCCTTCTTTGGTTCCAACCAATTTAGATTCCAAGGCTGAAGGCAAGAGGGTTGTCTCCAATGATTCTGAAAATAAGGTTACCAAACCAAAGGATATGAAGTGGGATTTTGGCAATTTGGATGCTTCATATCTCAACTCCAAAGGAAAAATAAGCTCAGAACTTGATAAGAAGGCCGAGCTTGATACAGATTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCTATCAAGGCAAAGTATTTGGATTCTGAATTGAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGCTGAATTGAGCAAAAGCTCAAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTCGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTGGAAGCAGACCTCTCCCCTGATCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGATTTGAAAAAGGGGAAAGTTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGCCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTAGAAACTGTCAAAGTCAAAGAGTTGTACTTGGGGGAGAAGACCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTCACAGCCATGGCCATTCTGAGCCTTACAAACCTTGGTGGGTAGTGGGAGGCAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA | 1602 | 0.4419 | MEEDQEVKHSCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKVSSFNNNNGGDRDRDRETGIMGSEGGTSNGGYGLRENPKKTWRFTNSVDETLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSVSFVSEAEQEQEQEEVAMSLMMLSRDVSPWCGLSSENSFHFESPSLVPTNLDSKAEGKRVVSNDSENKVTKPKDMKWDFGNLDASYLNSKGKISSELDKKAELDTDSAFEDNGIDDNRNNKYTSIKAKYLDSELKASSSKSWVKNKSPEAELSKSSNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADLSPDPTTESKLLKNEYVEEHEMVTVTTTTTTGFDNEEERERDLKKGKVHECPICLKVFPSGQALGGHKRSHHLPNGSDIARNCQSQRVVLGGEDPEIRDFFDLNLPASTEEEGHSHGHSEPYKPWWVVGGSSHKQEALIGLISN* | 534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g1100 | 533 | Gene3D | Classic Zinc Finger | 341 | 460 | - | - | |
| Vra3g1100 | 533 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 533 | - | - | |
| Vra3g1100 | 533 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Vra3g1100 | 533 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
| Vra3g1100 | 533 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 344 | 371 | IPR013087 | - | |
| Vra3g1100 | 533 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Vra3g1100 | 533 | Pfam | C2H2-type zinc finger | 100 | 121 | - | - | |
| Vra3g1100 | 533 | Pfam | C2H2-type zinc finger | 344 | 368 | - | - | |
| Vra3g1100 | 533 | Pfam | C2H2-type zinc finger | 437 | 461 | - | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 375 | 397 | - | - | |
| Vra3g1100 | 533 | Gene3D | Classic Zinc Finger | 1 | 124 | - | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 128 | 150 | - | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 175 | 189 | - | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
| Vra3g1100 | 533 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 100 | 120 | IPR013087 | - | |
| Vra3g1100 | 533 | SUPERFAMILY | beta-beta-alpha zinc fingers | 99 | 366 | IPR036236 | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 35 | 76 | - | - | |
| Vra3g1100 | 533 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 346 | 366 | IPR013087 | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 128 | 190 | - | - | |
| Vra3g1100 | 533 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 98 | 125 | IPR013087 | - | |
| Vra3g1100 | 533 | MobiDBLite | consensus disorder prediction | 375 | 391 | - | - | |
| Vra3g1100 | 533 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 533 | - | - | |
| Vra3g1100 | 533 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 33 | IPR036236 | - | |
| Vra3g1100 | 533 | SMART | c2h2final6 | 98 | 120 | IPR013087 | - | |
| Vra3g1100 | 533 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Vra3g1100 | 533 | SMART | c2h2final6 | 438 | 460 | IPR013087 | - | |
| Vra3g1100 | 533 | SMART | c2h2final6 | 344 | 366 | IPR013087 | - | |
| Vra3g1100 | 533 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 438 | 460 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra3g1100 | Vra-Chr3 | 11419179 | 11421907 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra3g1100 | 1 | 500 | C2H2 Transcription Factor Family | AT1G26610 | 31.810 | 3.47e-45 | 163 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vra3g1100 | zf-C2H2_6 | 4.2e-13 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g1100 | - | - | var:108345025 | 984.171 |
Event-related genes