Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1099 ATGGGAAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCTTCCAGATCAAATATGTCAAAGGGAAGAGAGATTGTTAATAAAAGAGAAGCAGTGGTTACTTCCAACGTGTTGGAGAACGGTTTGGCCTTAGACCCAAACCACATCGAGATTGCTACAAATGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAGTTATTTTACCTGAGAATCAAGAAAGAGACAGTATAGGACCTGTTGATCCAGATGCACCACCTGATCCAGAGAAAATTAGGCAGGAGGTAGCAGCAATAAAGACACAAGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTAGTTAGGAGACAAGCAGTTGTTACATTATGCTGTATGTATGGGTTTGTAAAGTTTCAAGCACTTGCCCGTGGACTAAAGATTAGGAAGTCTAATGTTGGATTTGAAATCCATCAGAAGCGTGGTCTGTTTAAGCCTCTGGAGGGCAAACTTGGTGAGCCGGTTGGTATTTCCACAAAAATTTCTAAGTTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAATTACAATAATGGCCCTGCGCTTGCAATATGTTAGTGGAGATCCAAATTCAGTGTTAAGCTGGTTGGAGCGCTGGTCATTATCTTGCTTTTGGAAACCAGTTTCCCAACCTAAGAAAATTCGAGACTCAAAATCTCAGAGAAAGCAGGGTAATATTTCAAATGGAGAAGTTCATATTTCCAAGTCAAGACGCACTAACAGGAAGCTTCCTGTTGCTAGTTTTGAACCAGTCCCAGTGCAAACAAATCCTGAATTTGAGAAACCTAAACGTAATTCCAGGAAAACACCGTACCAGGTGTCAGATCCAGAGCAAGACAATCCACAAAGTGAGCTTGAAAAGGTTAAACGCAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAGTGCTGTTCAGCCAGAAGTTGAGTCTGAGACTCTAAAGCAGCATTTGGAAATCACAACAGTCATTCCAGGTAATAATGGTTCAGAACAAGTGATCATTACTTCTGAGGAAAAGATCAAGAAGGAAGAAACTTTGACTATCTCTGATGTGTCTGATATCGAAATTACTCCAAGACCATTGGTTAACAAGGAAGTGTCTGACATTCCAAGTAATTATCAAGTGTCTGTAGAATCTGAACCCTTGTCAGAGACCACTACTAAAGATAGAAACACTTCTCGTGATGAAGTTCAAAATGGGCTAGGCAATCTACCAGAGGCTATTTTTAAAGAAGACAACTCCCTATTAACAAATGGAGATTTGAGTCATAAAGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAGCATCAAATTTGACGAAACAGGAGAATGGGGAAGATGGCTTAAAGAATAGTCCAAAAGTACCAAGTTATATGGCAGCAACTGAATCCGCCAAGGCAAAGTTGAGGGCACTAGGGTCAGGGTCCCCAAGGTTTGGAGAAGATGGAACTGAGAAAAACAACACTACTGGTTCTGGGAGACATTCTCTGCCATCTTCAACTGGCAACAAGATTAGTTCGCAATCACCTAGGACACAGAGATCAGTTCCAGCAGGTGGCAAAGAAAGTAAAAAAAGTGACAGATCAATAGCATCTTCTAAAGGAGGGAATGGTAAAGTAATTCAAGCAGAGTGGAGGAGGTGA 1761 0.4128 MGKSPGKWIKTVLFGKKSSRSNMSKGREIVNKREAVVTSNVLENGLALDPNHIEIATNEEDLELENEESEVILPENQERDSIGPVDPDAPPDPEKIRQEVAAIKTQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGFVKFQALARGLKIRKSNVGFEIHQKRGLFKPLEGKLGEPVGISTKISKLSANTFIRKLLASSITIMALRLQYVSGDPNSVLSWLERWSLSCFWKPVSQPKKIRDSKSQRKQGNISNGEVHISKSRRTNRKLPVASFEPVPVQTNPEFEKPKRNSRKTPYQVSDPEQDNPQSELEKVKRNLRKIHNPVVESAVQPEVESETLKQHLEITTVIPGNNGSEQVIITSEEKIKKEETLTISDVSDIEITPRPLVNKEVSDIPSNYQVSVESEPLSETTTKDRNTSRDEVQNGLGNLPEAIFKEDNSLLTNGDLSHKDLTGNENQKPTRKASNLTKQENGEDGLKNSPKVPSYMAATESAKAKLRALGSGSPRFGEDGTEKNNTTGSGRHSLPSSTGNKISSQSPRTQRSVPAGGKESKKSDRSIASSKGGNGKVIQAEWRR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1099 586 MobiDBLite consensus disorder prediction 251 320 - -
Vra3g1099 586 Pfam Protein of unknown function (DUF4005) 481 565 IPR025064 -
Vra3g1099 586 MobiDBLite consensus disorder prediction 520 555 - -
Vra3g1099 586 MobiDBLite consensus disorder prediction 469 485 - -
Vra3g1099 586 SMART iq_5 97 119 IPR000048 GO:0005515
Vra3g1099 586 SMART iq_5 120 141 IPR000048 GO:0005515
Vra3g1099 586 Gene3D - 96 145 - -
Vra3g1099 586 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Vra3g1099 586 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Vra3g1099 586 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Vra3g1099 586 PANTHER PROTEIN IQ-DOMAIN 31 1 575 - -
Vra3g1099 586 MobiDBLite consensus disorder prediction 409 441 - -
Vra3g1099 586 MobiDBLite consensus disorder prediction 456 586 - -
Vra3g1099 586 PANTHER IQ-DOMAIN 5-RELATED 1 575 - -
Vra3g1099 586 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1099 Vra-Chr3 11392290 11399705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1099 1 586 IQD Protein Family AT1G74690 43.339 2.85e-118 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1099 - - gmx:100786022 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1249 11 14888651 14893935 Vra3g1099 3 11392290 11399705 ECH
Vra3g1099 3 11392290 11399705 Vra3g1099 3 11392290 11399705 ECH