Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1098 ATGAGGACCACCCTCACCGGTTTGCCATTGGTGTTGCAACAATTCAGAGCTCTGTTGAAGAAGAATCTGTTACTGTCATGGCGGAACAAGAGAGCGACTCTTCTGCAATTGCTCTCTCCTCTCATATTCATTTTCCTCATATTCGCCATCGACAAGGCGATTAAGGCTCAGACGTCGACCTCCTCCGCCTACAAGACCGTCACCGACCCTCCCACCGAACCGTCTCCGCCCATAACTCCCTGTGAAGACAAGTTCTTCATCAAACTCCCATGCTACGACTTCGTTTGGAGTGGTGACCAAAACCCCATCTTCCAAACCATCGTCACCCGCATCATGAACAACAACCCCGGCAGACCCATCCCTCCCTCCAAGGTGAAGTCGTTCAAGAACAAGACCGAAGTGGATGCGTGGCTGTTCAGCAACCCTATGACTTGTCCAGGGGCGCTTCATTTTTCGCAGCTAAACGACACCGTTATAAGCTACGGTCTTCAGACCAACTCCACCAGTCTTCAGTGGAGAGGCAAATATCAGGACCCTACTATGTCATTTCAACTTCCTCTTCAGCTTGCCGCCGAGAGGGAAATTGCCAGACACCTTATTGGAGAGCCGGGTTTCAGTTGGAATGTGTTTCTGAGGGAATTCGCTCACCCTTCCTTGACTCCTTTCTCTGCCGTGGGTACAATTGGTCCCGCGTTTTTCCTCGCCATTGCTATGTTTAATTTTGTTCTTCAGATAAGCTCTTTGGTGACGGAGAAAGAGCTTAAACTTCGCCAGTCAATGACAATGATGGGCCTTTACGACTTTGCTTACTGGTCGTCCTGGCTCATTTGGGAGACGGTTGTCACAATCCTATCTTCCCTCCTCATAGTACTCTTTGGAATGATGTTCCAGTTCAGTTTTTTCTTGAAAAACAGTTTCGCTGTCCTGTTTATCTTTTTCTTCCTATTTGAACTTAATATGACTGGCTTGGCCTTCATGTTGTCTGCTTTCATTAAGAAGTCATCTTCGGCAACAACAATGGGATTCTCTATATTTATTGTGGGCTTTTTGACTCAGCTTGTGGTACAGGCAGGATTTCCTTACACGGATAATTTCTCCAAAACTTTACGAGATTTGTGGTCGTTATTCCCACCCAATCCTTTTTCTCAAGGTATACAAGTGCTTTCAGATGCAGTTGCAACTTCCGAAGACGATGGTGTTAGCTGGAGTAGACGAGGAGAATGCCTTCATACTGATGCAAACTGCGTGATAACTATTGATGATATTTATAAATGGCTTGCGGGTACATTCGTTCTCTGGTTTGTTCTGGCCATTTATTTTGACAATATAATCCCTAATGCATCGGGTGTGAGGAAGTCAATATTCTACTTTCTAAATCCCAATTATTGGATTGGAAGGGGTCAGAGAGTGAAAGAGGGTGGGCTTTGTAGTTGTGTAGGTTCAAACCCAAGTCAGGAAATAAGTACACCTGATGATGAAGATGTCCTTGATGAAGAAAGCAAAGTGAAACAGCAACTAACAGAAGGTCTGGTTGATGCAAATATTGCTGTTCAAATACATGGCCTTGTGAAGACCTATGCTGGTACACGTAACATTGGTTGCTGCTGCAAATGTACAAAGACTGCTCCTTACACTGCTGTTAAGGGTCTGTGGGTAAACTTTGCAAAGGATCAGTTGTTTTGTCTTCTAGGACCCAACGGAGCTGGAAAAACCACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTAGCGGAGATGCGTTGATTTATGGACATTCAATCAGAAGTTCTATTGGCATGTCAAACATTCGAAAGCTTATAGGAGTATGTCCACAGTTTGATATACTATGGGATGCACTGTCTGGCCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTATCCCCCGCTTCTATAAAATCAATTACCCAGACTTCATTAGCAGAGGTGAAACTCACGGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAGCGCCGTCTCAGTGTTGCAATTGCGCTTATTGGTGACCCTAAGTTAGTCATTTTGGATGAACCTACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAAAAAGGGCGTGCCATTGTTCTTACGACTCATTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAAGGAAGGCTTCGCTGCATTGGCACCTCAATCAGATTGAAATCACGCTTTGGTACTGGTTTTATTGCTAATATCAGCTTCTACGGAAACAATGAACGTAGTCCTACCAATGGTGATGCGATATCTACAGAGCATCGTGAGGAAGTGAAGAAATTCTTTAAGAATTATTTAGATGTAGAGCCAAAAGAGGAGACCGATAACTTTATAACTTTTGTGATTCCCCATGACAGAGAGGCGCTCCTGACAAATTTCTTTTCAGAGCTCCAAGAGAGAGAAAAAGAATTTGGCATTTCTGACATCCAGCTTGGTCTTACAACTCTCGAAGAAGTTTTCTTGAATATTGCAAGACAAGCAGAGCTAGAAAACGCTACAGCTGAAGGGAGGCTAATAACCCTGACCTTAACATCTGGGGAATCTGTGCAGATTCCCGTAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAATCCGTGGAAAATCCAACAGGGTTTATGGTAGAAGTTTACTGGGAGCAAGATGATACTGGGACCCTATGCATTTCTGGCCACTCGCAGAAGGTTCCTATTCCTCCTGGCGTTCAATTATCATCCTCACCTTCTGCAAGAAACCGTAGATATTTAAGCCGGGCAGGACCAATTAATGGAATTGTGATTGATCCAAGTCAAGTTAGTCCAGGTGATTTTCAGCGATAA 2901 0.4423 MRTTLTGLPLVLQQFRALLKKNLLLSWRNKRATLLQLLSPLIFIFLIFAIDKAIKAQTSTSSAYKTVTDPPTEPSPPITPCEDKFFIKLPCYDFVWSGDQNPIFQTIVTRIMNNNPGRPIPPSKVKSFKNKTEVDAWLFSNPMTCPGALHFSQLNDTVISYGLQTNSTSLQWRGKYQDPTMSFQLPLQLAAEREIARHLIGEPGFSWNVFLREFAHPSLTPFSAVGTIGPAFFLAIAMFNFVLQISSLVTEKELKLRQSMTMMGLYDFAYWSSWLIWETVVTILSSLLIVLFGMMFQFSFFLKNSFAVLFIFFFLFELNMTGLAFMLSAFIKKSSSATTMGFSIFIVGFLTQLVVQAGFPYTDNFSKTLRDLWSLFPPNPFSQGIQVLSDAVATSEDDGVSWSRRGECLHTDANCVITIDDIYKWLAGTFVLWFVLAIYFDNIIPNASGVRKSIFYFLNPNYWIGRGQRVKEGGLCSCVGSNPSQEISTPDDEDVLDEESKVKQQLTEGLVDANIAVQIHGLVKTYAGTRNIGCCCKCTKTAPYTAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTSGDALIYGHSIRSSIGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVKLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNERSPTNGDAISTEHREEVKKFFKNYLDVEPKEETDNFITFVIPHDREALLTNFFSELQEREKEFGISDIQLGLTTLEEVFLNIARQAELENATAEGRLITLTLTSGESVQIPVGARFVGIPGTESVENPTGFMVEVYWEQDDTGTLCISGHSQKVPIPPGVQLSSSPSARNRRYLSRAGPINGIVIDPSQVSPGDFQR* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1098 966 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 932 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra3g1098 966 Pfam ABC transporter 550 692 IPR003439 GO:0005524
Vra3g1098 966 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 763 IPR003439 GO:0005524
Vra3g1098 966 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 8 932 - -
Vra3g1098 966 CDD ABC_subfamily_A 517 751 - -
Vra3g1098 966 ProSitePatterns ABC transporters family signature. 665 679 IPR017871 GO:0005524
Vra3g1098 966 SMART AAA_5 556 740 IPR003593 -
Vra3g1098 966 Pfam ABC-2 family transporter protein 32 439 - -
Vra3g1098 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 745 IPR027417 -
Vra3g1098 966 Gene3D - 512 768 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1098 Vra-Chr3 11381266 11387744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1098 560 762 Calmodulin-binding Proteins AT2G36910 24.413 3.14e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1098 - - gmx:100786538 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1098 3 11381266 11387744 Vra3g1098 3 11381266 11387744 ECH