Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1096 ATGGCAAACGAACCTGCGAGCTTCTGGACTCAGGCAAACGCTCTCCTTAGAAAGAATTTAACGTTTCAGAAGCGAAATGTTAAAACAAACGTTCGACTCATCATGTTCCCGTTCCTGCTATGTCTGTTGCTGCTTCTGCTTCAACGCCTGGTGGATTCTCAATTGGACAAGGCAGAGAACAAGTGTGGGTGCGAGTGTGTGAGGAGAGAAGGAGACACGTGTGTGGAGGAGGAGTGCGGGATTCAGCATTCGGATTTGGACCAAGTAACAACCTGCGCCATTCCAAATCCTCCTGAATGGTCTCCTCTGTTGCAGGTGCCGGCTCCGCAGTACCGAGCTGTGAGAACGGACAATTTTCCCTTTTCCGATTATCCAAACGCCTCCTGCAGGAGGAACGGCTCCTGTCCTGTCACTATGCTCTTCACTGGGACAAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATTCCAAGTTTCTTCACTGCTATAAACAGCTCTTCTGTTATGGCTAGTTTGGCAGCAAATGTCGCTGGATCAGCCTCAAATACAGAAAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCAACCTATTTATTATCTTCAAAGTCAGTGCACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCCGCAGCAATTAGCAGAGAACAAGAGTTAGTTTGCGCCGAGGGCTTACCTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAGAGGTTATCGGAAAAGTAACCTAGAGGAACAAATCCAAGAGATAGCTGCCGGTTATGATTTTTTGAATTCAAATGGGAGAATGTTTAATGTCAGCATATGGTACAACTCCACCTACAAAAACGACACTGGTTCTACTGAAATTGCATTGGCGCGTATTCCTCGTTCTGTTAATTTGGTATCAGACGCCTATCTGCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTGTTCTTTACATGGGTTATCCTGCAACTTTTCCCTATTGCCTTGACATCGCTTGTATATGAGAAGCAACAAAGATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCGTATGGTTATTTTCTGGCCTTATCAATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCACTCATAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTGCACTGGCTTTTTTATTGGCTTCCGTGTTTTCAAATGTTAAAACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGACACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGCTGTATCCTGGGTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATTCGTTTAATGGTGACGCTTTGGGGACTGATGGTATGCGCTGGGGCGATCTGAGCGATAGCGAAAATGGCATGAAGGAGGTCTTAATTATAATGTTTGTGGAGTGGATTTTGGTGCTTTCCTTTGCCTATTATATCGATCAAGTTTTGTCAACAGGAAGCAGAAAAAGTCCTCTTTTTTTCTTTAAAAGATTTCACAAAAAGCCTCATTCATCTTTTCGGAAGCCTAGTATCCGAAGGCAGAAATCCAAGGTTTTTGTTCAGATGGAGAAACCTGATGTCACTCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCGACCATCAATCAAGCAATTGTATGTGACGACCTGAGAAAGGTCTACCCTGGGAGAGATGGTAACCCTGAGAAAATTGCGGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGAGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACTGCATTTGTTCAAGGTCTTGACATAATAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAACATGATTTGCTTTGGGAATCCCTGACTGGAAGAGAGCATCTACTCTTTTATGGAAGACTTAAAAATCTTAAAGGTTCAGCCTTGACAGAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAAAAAGCTGGAAAGTACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTCAAGCGTGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCGATGGAAGAGGCAGAGGTCCTATGCGATCGATTAGGAATATTTGTAGATGGAAGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGGTATGGAGGAACCTACGTGTTCACAATGACAACATCTGTGGATGATGAAAAGGATGTAGAGAATCTGGTGCGAAGGCTTTCCCGAAATGCTAACAAGATCTACCATATCTCTGGTACACAAAAGTTTGAGCTACCAAAGGGAGAGGTTAAAATAGCAGATGTATTCAAAGCAGTTGAAACTGCAAAAAGAAGCTTCAGCGTTTCAGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAAGTTGCACGTGGGGCTCAGCCATTTGACACCTTGTCATAG 2841 0.4203 MANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLLLLQRLVDSQLDKAENKCGCECVRREGDTCVEEECGIQHSDLDQVTTCAIPNPPEWSPLLQVPAPQYRAVRTDNFPFSDYPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSFFTAINSSSVMASLAANVAGSASNTENTNFLEPAFFSDQPIYYLQSQCTQNSTFSISFELSAAISREQELVCAEGLPLWRNSASEVNNELYRGYRKSNLEEQIQEIAAGYDFLNSNGRMFNVSIWYNSTYKNDTGSTEIALARIPRSVNLVSDAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQRLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSLIGLNFFTMNDYSIQFVFYFIYINLQIALAFLLASVFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYSFNGDALGTDGMRWGDLSDSENGMKEVLIIMFVEWILVLSFAYYIDQVLSTGSRKSPLFFFKRFHKKPHSSFRKPSIRRQKSKVFVQMEKPDVTQEREKVEQLLLEPTINQAIVCDDLRKVYPGRDGNPEKIAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIITHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVDDEKDVENLVRRLSRNANKIYHISGTQKFELPKGEVKIADVFKAVETAKRSFSVSAWGLADTTLEDVFIKVARGAQPFDTLS* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1096 946 Pfam ABC-2 family transporter protein 196 554 - -
Vra3g1096 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 862 IPR027417 -
Vra3g1096 946 Coils Coil 255 275 - -
Vra3g1096 946 Gene3D - 616 888 IPR027417 -
Vra3g1096 946 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 5 946 - -
Vra3g1096 946 SMART AAA_5 654 837 IPR003593 -
Vra3g1096 946 Pfam ABC transporter 646 790 IPR003439 GO:0005524
Vra3g1096 946 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 946 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra3g1096 946 CDD ABC_subfamily_A 628 849 - -
Vra3g1096 946 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524
Vra3g1096 946 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 861 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1096 Vra-Chr3 11347629 11357008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1096 633 853 Calmodulin-binding Proteins AT2G36910 22.747 3.73e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1096 - - gmx:100805474 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1096 3 11347629 11357008 Vra3g1096 3 11347629 11357008 ECH