Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1087 ATGGATTCTCTCAAAATGTTCAAAGGTTACGGCAAAATAGAACGCGATCACAACGGAATCGAAGATCAGCAACCAAACCCTAAATCCCAAATCTCAAAACCCGTAATCACCACAACAATTTCCGTCTTCGCAATCCTTTCCATCACTCTAACTCTCGCCTTCGCTATCGCATCCATTGCGCACCACCAAGCCACTGAGTCACAACACCTTTCCAACTCGGCCGACTCCATCCGATTCGTCTGCAACGTCACGCGCTTCCCCGCCGCGTGCCTCGCTGCCATCCCGCCCTCCGCCAACGCCACCGATCCCCAAACCATCCTCGCCCTCTCGCTCCGCGCCTCGTTCCACGCGCTCCAGAGCCTCGCGTCGTCGCTCCGCGGGACGAAGGGAGGTGCACTCGCCGACTGCAAGGACCAGTTCGACGACGCGCTGAGTCGACTCAACGACTCGCTGTCGGCCGCTGCGGCGCTGACCGACAAAGCAGTGAGCGACGTGCATACGTGGGTGAGCGCGGCGGTGACGGACCAGCAGACATGCCTGGACGGACTGGAAGAGGCGGGTGACGCGGCGGGCCTTGAGAAGATGAAGAAAATGATGACGAGGTCCGAGGAGTATATGAGTAACAGTTTGGCTATTGTTGCTAATATTCGCGATTTGTTAAGCCATTTCAACATGAAACTCCATTGA 687 0.5648 MDSLKMFKGYGKIERDHNGIEDQQPNPKSQISKPVITTTISVFAILSITLTLAFAIASIAHHQATESQHLSNSADSIRFVCNVTRFPAACLAAIPPSANATDPQTILALSLRASFHALQSLASSLRGTKGGALADCKDQFDDALSRLNDSLSAAAALTDKAVSDVHTWVSAAVTDQQTCLDGLEEAGDAAGLEKMKKMMTRSEEYMSNSLAIVANIRDLLSHFNMKLH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1087 228 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 216 IPR035513 -
Vra3g1087 228 CDD PMEI-like_3 80 216 - -
Vra3g1087 228 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 215 IPR006501 GO:0004857
Vra3g1087 228 PANTHER PECTINESTERASE 1-LIKE 3 223 - -
Vra3g1087 228 PANTHER PECTINESTERASE 3 223 - -
Vra3g1087 228 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 217 IPR035513 -
Vra3g1087 228 Pfam Plant invertase/pectin methylesterase inhibitor 76 212 IPR006501 GO:0004857
Vra3g1087 228 SMART PMEI_2 72 212 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1087 Vra-Chr3 11219098 11221015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1087 1 228 Carbohydrate Esterase AT1G53840 33.594 1.25e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1087 - - gmx:100789567 298.13