Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1083 ATGATGGGGTCTGAGACTTCAGCCACTGTTGTTGAAAAGCTCAACAATTCACAAGATTTATCAAGAAAAAGGTCTTGTTCTAATAAACAGAAACAAGAGAAAATTCCTAAGAGAATTCGCAAGGCTGAAAGAGAGAAAGAGAAGCGTGAACAGTTGAATGAACTCTTTCTTGGTCTTGCTCATACACTCGAGGTAACAGATCTTAAAGAACAGAACAATGGAAAAGCTTCTATATTGAGGGAATCCATCAGATTGCTGAAAGACTTGTTCAGTCAGATCGAGTCCTTGAAAAAGGACAGTGTATCTCTGTTGTCAGAGACTCACTATGTGACTATGGAGAAAAATGAAATGGTAGAGGAGAATTGTGTTCTGAAAAGTCAAATTGAGAAGCTTGCTGGTGAAATAGAAGCAAGAGTAGTTCAATGTGGACATAACAACCTGATGAATCCATTTCCAGAAGCAGAAAAGATTACAGAGTTTTCAGGGGAGAATCTGCAATTGTCCAGCACAGAAGCAGCAGTGCAGCAAGGACATGCAGTTTTGGTTGTCCCTGTATCCTACTCCAATGGATTCATGGCCACTGCAATTGCTTGCAGAGCAACCAACTTCAAATTAAGAATATGGTGTTGTGTAGAGTTGAAATGGACCCTCTGA 654 0.4006 MMGSETSATVVEKLNNSQDLSRKRSCSNKQKQEKIPKRIRKAEREKEKREQLNELFLGLAHTLEVTDLKEQNNGKASILRESIRLLKDLFSQIESLKKDSVSLLSETHYVTMEKNEMVEENCVLKSQIEKLAGEIEARVVQCGHNNLMNPFPEAEKITEFSGENLQLSSTEAAVQQGHAVLVVPVSYSNGFMATAIACRATNFKLRIWCCVELKWTL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1083 217 Coils Coil 79 99 - -
Vra3g1083 217 MobiDBLite consensus disorder prediction 1 46 - -
Vra3g1083 217 MobiDBLite consensus disorder prediction 24 46 - -
Vra3g1083 217 PANTHER TRANSCRIPTION FACTOR BHLH47 2 187 - -
Vra3g1083 217 Pfam Helix-loop-helix DNA-binding domain 37 89 IPR011598 GO:0046983
Vra3g1083 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 89 IPR011598 GO:0046983
Vra3g1083 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 111 IPR036638 GO:0046983
Vra3g1083 217 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g1083 217 Gene3D - 32 115 IPR036638 GO:0046983
Vra3g1083 217 PANTHER TRANSCRIPTION FACTOR BHLH47 2 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1083 Vra-Chr3 11195137 11196821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1083 2 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 44.000 2.03e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1083 - - gmx:100809240 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1083 3 11195137 11196821 Vra3g1083 3 11195137 11196821 ECH