Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1081 ATGGAGGGAGGTGATGATTTCCACCACCACCACCAACATCACCAACACCGACAAAACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCCTGCTCCACTTCCTCCCCATACCCTTCCTTAGCCATCTCCCCCCAACCCTCCACCTCCAACACCACCACCCTCCTCCCCACACCCTCTCAAGCCTCCCCCAAAAAGCCACCACCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGTCGTCGAATTCGAATGCCTGCTCTCTGCGCCGCCAGAGTTTTCCAGCTCACGCGGGAGCTGGGACACAAGTCCGACGGTGAGACCATAGAGTGGCTCCTCCAGCAGGCAGAGCCTGCTGTCATCGCCGCCACTGGCACCGGCACCATCCCTGCTAACTTCACTTCCCTTAACATATCTCACCGGAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTGCGATCCAACTACTTCAATTCAAACTTTTCTCTCCAACCCAGGAGAAGCCTATTCCTTGAAAACACCAATACTTCCACGACGCTCCTCAACTTTCAATCCAACAACCCCATCTCCACTTCCATTTTCCAACCCAAGCACGAATTGCGCGACTCCTCGTCCCTGGACCTGTCCTCCGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGACGACCCTTGGAGCAAGACCTATCCTCGACCATGCAACACCAAGTCGGAAGCTATTTGATGCAATCAAGCTCCTCGGGGACAATTCCGGCGAGCCATGCTCAAATTCCGGCGAATATATGGATGGTGGCGAATTCCAATAGTCAAGGTGTGAGTGGTGAAGCTCCTCTCTGGACGTTCCCCGGTGTGAGTAACAGTGCCTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCCACCCCAATGGCCCTTTTACCAGGTCAGCAATTAGGGTCTTCTGGGATTGGTGGGAACATGAACGAAGGGCATTTGAGCATGCTTTCGGGGCTAAACCCTTACCGGACGGTGATCGGCGTTTCGGAATCTCAGGCGAGTGAGTCACAGTCACATCACGGTGGAAGCGAGGATCGGCATGATGATAACTAA 1128 0.5399 MEGGDDFHHHHQHHQHRQNFPFQLLEKKEDQDPSSCSTSSPYPSLAISPQPSTSNTTTLLPTPSQASPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISHRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSIFQPKHELRDSSSLDLSSENNEEGLGRKRRPLEQDLSSTMQHQVGSYLMQSSSSGTIPASHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNMNEGHLSMLSGLNPYRTVIGVSESQASESQSHHGGSEDRHDDN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1081 375 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Vra3g1081 375 MobiDBLite consensus disorder prediction 355 375 - -
Vra3g1081 375 MobiDBLite consensus disorder prediction 1 91 - -
Vra3g1081 375 MobiDBLite consensus disorder prediction 210 242 - -
Vra3g1081 375 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 10 374 - -
Vra3g1081 375 Pfam TCP family transcription factor 76 233 IPR017887 -
Vra3g1081 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 374 IPR005333 GO:0003700
Vra3g1081 375 MobiDBLite consensus disorder prediction 34 64 - -
Vra3g1081 375 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1081 Vra-Chr3 11161170 11162689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1081 66 323 TCP Transcription Factor Family AT3G47620 49.387 2.10e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra3g1081 TCP 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1081 - - gmx:100809154 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1081 3 11161170 11162689 Vra3g1081 3 11161170 11162689 ECH