Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1077 ATGGAAAATAGACAAGGCAGTCCCAGTTGCAGAACCTTGTCTTTGCGTTTCAAACACTCACTCCCTTCTATAGCAGGAATCCACAAGGGATACAAGAACAAAACAAGAAAAAGGACTTTTTATTTTTTATTTTTTCCTTCATACCAAATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCATGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATTGGTTCCCTCTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCCGACTCAGATGGACCAACTATCTCCGACCTGGAATCAAAAGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGTAACAGATGGGCTGCAATAGCCTCCTATCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAAAAGAAGCTGAAGAAGATGCAGAGTGAGGAAGGTGACGATGAAGGTAACAATTATGACAAGGGAAACTCTTGTTCACAGCCAAAGGGTCAATGGGAGAGAAGACTTCAAACAGATATCCACATGGCCAAACAAGCCTTATGTGAGGCTTTGTCCCTTGACAAACCAAGCCAAATCTTCCCTGAGACCAAACTACCTTCGACTTCTTCCCATCCCACATCACCAAACAAAACATCATCCTTGTATGCCTCAAGCACAGAAAACATAGCCAGGTTGCTGGACAATTGGATGAAAAAATCTCCAAACAAAACCGAATCAAACTACTCCATGAGCAACATGGTAACCACAGGGTCTAGTTCGAGTGAGGGAACACAAAGCACACAGGACCAGCTTGACTCCTTGTGGAGCTTCCATTCACAGTCTGTGTCAGCAGAAGAGAACACGAACTTGGTGGAGAGCAAGCCAAACGTAGAGACGCAAGTGCCTCTGATGCTGCTGGAGAATTGGCTTTTCGAGGATGGTGCACCTCAGTGCAACGAAGATCTCATGAACATGTCACTAGAGGAAACTACAGATGGGTTGTTCTAG 1071 0.4444 MENRQGSPSCRTLSLRFKHSLPSIAGIHKGYKNKTRKRTFYFLFFPSYQMGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQSEEGDDEGNNYDKGNSCSQPKGQWERRLQTDIHMAKQALCEALSLDKPSQIFPETKLPSTSSHPTSPNKTSSLYASSTENIARLLDNWMKKSPNKTESNYSMSNMVTTGSSSSEGTQSTQDQLDSLWSFHSQSVSAEENTNLVESKPNVETQVPLMLLENWLFEDGAPQCNEDLMNMSLEETTDGLF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1077 356 MobiDBLite consensus disorder prediction 220 243 - -
Vra3g1077 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 50 341 - -
Vra3g1077 356 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Vra3g1077 356 Gene3D - 118 191 - -
Vra3g1077 356 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Vra3g1077 356 MobiDBLite consensus disorder prediction 222 243 - -
Vra3g1077 356 Gene3D - 62 115 - -
Vra3g1077 356 MobiDBLite consensus disorder prediction 261 291 - -
Vra3g1077 356 SMART sant 62 112 IPR001005 -
Vra3g1077 356 SMART sant 115 163 IPR001005 -
Vra3g1077 356 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Vra3g1077 356 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
Vra3g1077 356 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 50 341 - -
Vra3g1077 356 SUPERFAMILY Homeodomain-like 60 157 IPR009057 -
Vra3g1077 356 CDD SANT 65 110 IPR001005 -
Vra3g1077 356 CDD SANT 118 161 IPR001005 -
Vra3g1077 356 MobiDBLite consensus disorder prediction 168 193 - -
Vra3g1077 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 114 IPR017930 -
Vra3g1077 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 165 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1077 Vra-Chr3 11063353 11064930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1077 50 356 MYB Transcription Factor Family AT5G62470 50.829 2.60e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g1077 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1077 K09422 - gmx:100794319 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1077 3 11063353 11064930 Vra3g1077 3 11063353 11064930 ECH