Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1076 ATGAAGAAGAGACAGGTGGTGCTGAAAAGAGATGTGGCCAACACTTCATCTTCAGTGACCAGAAATGTAAGATATGGAGAGTGCCAGAAGAATCATGCAGCGAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGTACAGGGGATGGAGGCGGTGGAGCTCTTACATGCGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGAGAAGTGCAAACTGAGGTAGTATGTGAGTACTCTCCTCCTAATTCTGCTCGCTAA 273 0.4835 MKKRQVVLKRDVANTSSSVTRNVRYGECQKNHAANIGGYAVDGCREFMASTGDGGGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1076 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Vra3g1076 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Vra3g1076 90 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
Vra3g1076 90 PANTHER MINI ZINC FINGER PROTEIN 3 3 87 - -
Vra3g1076 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1076 Vra-Chr3 11004691 11005563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1076 1 88 Zinc finger-homeobox gene family AT1G18835 78.652 6.64e-43 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra3g1076 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1076 - - gmx:100785967 162.925