Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1067 ATGCGGGAGCACGTGGTTTTATCTGTTGTTGATCCTCTTCTTGCAGCATCTTTGCAACCTGAGCACGGTGGCGATCAAGAAAAAGATCTTACCCTAATGGTGGAGTGTCGCATTTGCCAGGAAGATGACACTATTCAAAATTTGGACATACCCTGTGGATGCAATGGAACCTTGAAGTTTGCTCATAGGGAATGTGTTCAGCAATGGTGCTACGAGAAGGGTGATACAATTTGCGAAATCTGCCATCAGCCATTCAAACCTGGCTATTCTGCGACAACAACTGTTTACCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGAAAGCTCTAGTATTCCTTTAGATTTGCACAATTCTCGACTTTTGGCTATTGCAGCTGTAGAGCACCAAGTTCCAGAGATTCGTGAAGGTTATGCCAATGCTGCTGGCACTAGTGGAATTACATTGTGGCACTCGGTTGGTCTAATTTTAATGGCTCTTTTACTTCTGAAGAATGTTGCTCCCCTCTTCAATGCTGATGTGGAGAAAGTTTTAACGTATTTTTATTTTTTCTTTCTTCGTACGGCTGCTGTTGTCCTTCCTTGGTATCTTATGGCCTGGATAATTCGCGTAATACAGCATCAAAGGCAAAGACAACAAGCACCTGAAGAACTTGCATTTATGCTACAAGCAGACGAACAAGGTTAG 693 0.4286 MREHVVLSVVDPLLAASLQPEHGGDQEKDLTLMVECRICQEDDTIQNLDIPCGCNGTLKFAHRECVQQWCYEKGDTICEICHQPFKPGYSATTTVYHPGDTSIDISDDWESSSIPLDLHNSRLLAIAAVEHQVPEIREGYANAAGTSGITLWHSVGLILMALLLLKNVAPLFNADVEKVLTYFYFFFLRTAAVVLPWYLMAWIIRVIQHQRQRQQAPEELAFMLQADEQG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1067 230 Pfam Protein of unknown function (DUF3675) 87 204 IPR022143 -
Vra3g1067 230 CDD RING_CH-C4HC3_MARCH 36 82 - -
Vra3g1067 230 SMART ringv_2 35 82 IPR011016 GO:0008270
Vra3g1067 230 ProSiteProfiles Zinc finger RING-CH-type profile. 28 88 IPR011016 GO:0008270
Vra3g1067 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Vra3g1067 230 SUPERFAMILY RING/U-box 34 86 - -
Vra3g1067 230 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 22 222 IPR033275 -
Vra3g1067 230 PANTHER OS11G0600700 PROTEIN 22 222 - -
Vra3g1067 230 Pfam RING-variant domain 36 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1067 Vra-Chr3 10877259 10885019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1067 35 83 C3H Transcription Factor Family AT2G37950 38.462 6.40e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1067 - - vra:106756822 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1067 3 10877259 10885019 Vra3g1067 3 10877259 10885019 ECH