Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1065 ATGGAGAATCACCAACTCACGTTTTGGAATTCTAATTATCAAATTGATGAAAACTCATTTGCACCAACGTGCCAATTTTCTTCGTATGATTATTTCAGAGGTAATGCCAGTGATGGGTTTCATTGGCCCTATGAATTTCCTCTGCAAGATAGCTATTTTGATGTTGTCCCTTTCATGAAGTGTTATTATCCCCATGACATTTTATACGAAACTTTGCCGCTTGAACCAACCCCACTAAGTTTTCAAGACTATGACTTCAGTGATGTTAAAAACGTGCTTTCTGCGTGGAACGAAGTTGACGTTTCAGACCATAAGCCTGCGTTTTCATCGAGCAACGATGGTGGAAGTGTGAATGATACGATGGAAGAAGTGAAGGGTAAACACAGAGAAGAGAGAATTAGTAGCAGTGCGAGAAATCTATCAAGGGAAACCGTTTCTCAGTACTTCTACATGCCTATATCACAGGCTGCTAAAGAGCTTAACGTTGGTCTCACACACTTGAAGAAAAGGTGCAGGGAATTAGGTATTCAAAGGTGGCCACATAGGAAGCTAATGAGCCTGCAAACCCTTATTAAGAACATGCAAGAGCAAGTAGAGTCTGAGGGACCTGAAAATGATGAAAAAATAAGGACTGCCATTGAAATGTTGGAGAAAGAAAAGAGCTCGGTGGAGCAAAAACCTGATTTGGAACTTGAAGATAAAACAAGAAGGCTTAGACAAGCTTGTTTCAAGGCTAACTACAAGAAAAGGAAACTGATGACCATGAGGATCATGGAACCCAATCTTCCCTTGCTGCCCTATCCCACAAGTATTGACAAAGGGGGTGAATAA 831 0.4091 MENHQLTFWNSNYQIDENSFAPTCQFSSYDYFRGNASDGFHWPYEFPLQDSYFDVVPFMKCYYPHDILYETLPLEPTPLSFQDYDFSDVKNVLSAWNEVDVSDHKPAFSSSNDGGSVNDTMEEVKGKHREERISSSARNLSRETVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNMQEQVESEGPENDEKIRTAIEMLEKEKSSVEQKPDLELEDKTRRLRQACFKANYKKRKLMTMRIMEPNLPLLPYPTSIDKGGE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1065 276 Pfam RWP-RK domain 139 187 IPR003035 -
Vra3g1065 276 PANTHER PROTEIN RKD1-RELATED 40 257 - -
Vra3g1065 276 ProSiteProfiles RWP-RK domain profile. 123 208 IPR003035 -
Vra3g1065 276 PANTHER PROTEIN RKD4 40 257 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1065 Vra-Chr3 10861179 10862306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1065 46 255 AtRKD Transcription Factor Family AT1G18790 46.226 8.96e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra3g1065 RWP-RK 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1065 - - vun:114163408 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1892 7 38450523 38451673 Vra3g1065 3 10861179 10862306 PCT