Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1061 ATGGCCACCGTCACCACCCAAGCCTCCGCCGCCATTTTCCGGCCATGTGCCTCAAAATCTAGGTTTCTGACCGGGTCTTCCGGGAAACTGAACCGGGAAGTGAGTATGAGGCCAATGGGGTGTCCTCCTTCTGCATCTTTCAAGGTTGAAGCCAAGAAAGGAGAGTGGTTGCCAGGCTTGGCCTCCCCAGCTTACCTTAATGGCAGTCTTCCCGGTGACAACGGGTTTGACCCTCTGGGGCTTGCTGAGGACCCAGAGAATTTGAGGTGGTATGTTCAAGCTGAGCTTGTGAATGGACGCTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAATTGGGAATCATCAATGCCCCTCAATGGTATGATGCAGGGAAATCAGAGTACTTTGCTTCATCTTCCACCCTCTTTGTGATTGAGTTCATCCTGTTCCATTATGTGGAGATCAGAAGATGGCAAGACATCAAGAACCCTGGCAGTGTCAACCAAGATCCCATCTTCAAGCAATACAGCTTGCCCCCACACGAGACTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAACGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGGAAAGGACCATTTGACAACCTCTTGCAGCATCTCTCTGACCCATGGCACAACACCATCATCAACACAATTCGTGGCTACTAA 759 0.5046 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVSMRPMGCPPSASFKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKLGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPHETGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIINTIRGY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1061 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
Vra3g1061 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Vra3g1061 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Vra3g1061 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Vra3g1061 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1061 Vra-Chr3 10812180 10813274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1061 43 245 Chloroplast and Mitochondria Gene Families AT3G61470 52.830 2.99e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1061 K08910 - gmx:100798548 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1061 3 10812180 10813274 Vra3g1061 3 10812180 10813274 ECH