Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1060 ATGGTGCTTTTGGGGTTTCTCTTGCTGGGATTCCTTTCTCTGGCTTCACCTCTCTCTTCTGCTTCTGATTATGGTTGGATGAATGCTCATGCAACCTTTTATGGAGGGGGTGATGCCTCTGGCACTATGGGTGGAGCATGCGGGTATGGAAACCTTTATAACGAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAATTTGCGGGGCATGTTTCGAGATTAGGTGTGTTGATGATAAGAATTGGTGTCTTCCACGCTCAGTTGTGGTCACTGCAACCAATTTCTGTCCCCCAAACAATGCTCTCCCAAACACTGCAGGAGGATGGTGCAACCCTCCCCTTCACCATTTCGACCTTTCTCAACCTGTCTTCCAACAAATTGCTCAATACAGAGCTGGAATAGTACCTGTTGCTTACAGAAGGGTCCCTTGCCAAAAGAAAGGGGGCATCAGATTCACTATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACAAACGTGGGAGGTGCTGGTGATGTTCGTGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAACCTATGACCAGAAACTGGGGTCAGAACTGGCAAAGCAACAGTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGAGGGACGCACTGTGGTCTCTTACAATGTTGCACCGTCAAGTTGGTCCTTTGGCCAAACTTTCAACGGCAACCAATTCGTTTAA 750 0.4693 MVLLGFLLLGFLSLASPLSSASDYGWMNAHATFYGGGDASGTMGGACGYGNLYNEGYGTNSAALSTALFNNGLICGACFEIRCVDDKNWCLPRSVVVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPVAYRRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVRGVSIKGSRTNWQPMTRNWGQNWQSNSYLNGQSLSFKVTTSEGRTVVSYNVAPSSWSFGQTFNGNQFV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1060 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Vra3g1060 249 Pfam Lytic transglycolase 62 146 IPR009009 -
Vra3g1060 249 Gene3D - 13 152 IPR036908 -
Vra3g1060 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Vra3g1060 249 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Vra3g1060 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vra3g1060 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vra3g1060 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Vra3g1060 249 PANTHER EXPANSIN 8 248 - -
Vra3g1060 249 SMART dpbb_1 61 146 IPR007112 -
Vra3g1060 249 Gene3D - 154 248 IPR036749 -
Vra3g1060 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Vra3g1060 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1060 Vra-Chr3 10799326 10801564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1060 1 248 Expansin Gene Family AT2G03090 76.613 7.91e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1060 - K20628 gmx:100799075 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1035 4 17563815 17565420 Vra3g1060 3 10799326 10801564 ECH
Vra11g1246 11 14490255 14491754 Vra3g1060 3 10799326 10801564 ECH
Vra3g1060 3 10799326 10801564 Vra3g1060 3 10799326 10801564 ECH