Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1056 ATGGAAAACGTTTCAGTTCTGTGTAAGGAAGAGGTTCCGATGGATTTGCCTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTACTCATTACCTTTACAGGAAGGTAACTGAGACAAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTGAACAGGTCTGAACCTTGGGATTTGCCATGGAAGGCCAAAATGGGAGAGAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAGTATCCAACGGGTTTGAGGACCAACAGGGCCACTGAATCAGGATACTGGAAGGCCACTGGGAAAGACAAAGAGATCTTCAGAGGGAAATCTCCTGTGGGAATGAAGAAAACTTTGGTTTTCTACAAAGGAAGGGCACCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAATATAGACTTGAGGGTAAATTCTCTGTCCCCAATCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCGGGTGGGAAGAAGACTCATATTGATGGGATAATGATGATGGACTCTTACGGAAACAACGAATTGGGTTCATCTGCTTTGCCACCTCTTACTGATTCCTCACCTTCCATTGGCAACACCAAAGCATTGAGTGTGTCTGATCAGGTTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAGGGATCTTCGATTCCTTGAGCAACATCAACATCATCAACAACAACAACCCCCTTTATGGGGTTTCTTCAAACCATTCATTCTACTCCACTCAAGGGTTTCAACTTCAGGCTCCACCAACGCTGCCTTCACCCGGTTCTTCAAACCATTACCTCAGATCCTTCTTTAACAACCATGGAAAAGGATCATTCTTGAGGAATGGGTTTGAACCAGAGACGGAAATGGTGAGTGTCTCACAGGAAACAGGTGTTTCTACTGAAGTGAACGCAGAAACCTCTTCAGTTGTGTCAAATCTTGAGATGGGGAATAGGGTCTTTGAGAATCAAAACAACCCAATTGGTTCGGCTGCACCAGTGGACCTTGCTAGCTTGTGGAACTACTGA 1068 0.4513 MENVSVLCKEEVPMDLPPGFRFHPTDEELITHYLYRKVTETNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLEGKFSVPNLPKTAKNEWVICRVFQKSSGGKKTHIDGIMMMDSYGNNELGSSALPPLTDSSPSIGNTKALSVSDQVYVPCFSNPIDVPRGIFDSLSNINIINNNNPLYGVSSNHSFYSTQGFQLQAPPTLPSPGSSNHYLRSFFNNHGKGSFLRNGFEPETEMVSVSQETGVSTEVNAETSSVVSNLEMGNRVFENQNNPIGSAAPVDLASLWNY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1056 355 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Vra3g1056 355 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Vra3g1056 355 SUPERFAMILY NAC domain 14 166 IPR036093 GO:0003677|GO:0006355
Vra3g1056 355 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 351 - -
Vra3g1056 355 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vra3g1056 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1056 Vra-Chr3 10712970 10714957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1056 14 355 NAC Transcription Factor Family AT5G07680 57.310 2.07e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra3g1056 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1056 - - gmx:547650 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1056 3 10712970 10714957 Vra7g1902 7 38527398 38528990 ECH
Vra3g1056 3 10712970 10714957 Vra3g1056 3 10712970 10714957 ECH