Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1053 ATGGGAAGAACTCCTTGCTGCAGTCACGACCAACTCAGAAAAGGTGCCTGGACTGTTCAAGAAGACCAGAAACTCATTGCTTACATTCACAAACATGGCACTGGAAGCTGGCGTACCCTTCCTCAGAAAGCTGGTCTTCAGAGATGTGGAAAGAGTTGCAGGCTAAGATGGTTTAACTACCTCAGGCCAGACATTAAGAGAGGAAAACTGAGCCCAGAAGAAGAGCAGAAGATTATAAAACTTCAGGCTGTTCTTGGCAACAGGTGGTCAAGTATTGCAAAGCATTTACCAATGCGAACTGATAACGAAATAAAAAACTATTGGAACTCATATCTGAAAAGGCACTATGAAAAGAATGATGTGTATCCATCTAGCTCAAAACCAATTAGCACTGCTAGTTCAACAGAATCAAAATCCAGTGACTTGTGCAAGGTTCCATCAAAGGAAACTGATTGCCATGGACCAAATGCCACTCCACACCAATCTAACCAGACCAACTTACCAAAGACAATGTCATCCTCAACTCAGCTTCTCAACAGAGTTGCTAGTAAAATTCTTTCATCTGGGTACCTAGATGCAATAAAATCATATCAACATGCTATTGCTGGGAAAAGCAACGGTGATAGTGTGGTTAAAACCGGAATTGGAGTAGAAAAGGAGGGTAACAGAGACCCCCTTTTGCCTAATTTGACCTCATCAAATCATTCAGTAACTTGTTCTGCTCAGCTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCACGGCCTTGAATCTGCAAAAGCTGTTTTTTCAAAATTACTGGAAAGCAGTGAAAAAGGTGACAGTGGTAGTGATGGTAGCTTTATTAGCAGTGATCAAATTGGAGAGTGTTTGAATGCTCTAAGCCCTTTTGAGGATGGACCGCACATAACGAACGTGGTTGGGTCCCCTTCTAGTCCTTCTCTCATATTCAATCAAGTGACCACACCCTCATGCTTTTCAGACAATGAAGATAATTGGCAAAACGTTTCATCTAACTACGTTTCATTCAGACAATGTGCTCCAACTGCTCCTGAATGCAGTGTTTCTGAACTCAACTTGGGTGAGTCTTCTAGTTCAACGTCATGTTTCCTCTTTGAAAATACTGATCTCGGAATCTGTGATGATGAAATAAGCAAGTACATTCAGTATTTGTAA 1182 0.4146 MGRTPCCSHDQLRKGAWTVQEDQKLIAYIHKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRHYEKNDVYPSSSKPISTASSTESKSSDLCKVPSKETDCHGPNATPHQSNQTNLPKTMSSSTQLLNRVASKILSSGYLDAIKSYQHAIAGKSNGDSVVKTGIGVEKEGNRDPLLPNLTSSNHSVTCSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGDSGSDGSFISSDQIGECLNALSPFEDGPHITNVVGSPSSPSLIFNQVTTPSCFSDNEDNWQNVSSNYVSFRQCAPTAPECSVSELNLGESSSSTSCFLFENTDLGICDDEISKYIQYL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1053 393 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra3g1053 393 MobiDBLite consensus disorder prediction 123 141 - -
Vra3g1053 393 Gene3D - 69 144 - -
Vra3g1053 393 Gene3D - 14 66 - -
Vra3g1053 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra3g1053 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra3g1053 393 PANTHER TRANSCRIPTION FACTOR MYB51 1 192 - -
Vra3g1053 393 CDD SANT 16 61 IPR001005 -
Vra3g1053 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra3g1053 393 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra3g1053 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g1053 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g1053 393 CDD SANT 71 112 IPR001005 -
Vra3g1053 393 MobiDBLite consensus disorder prediction 154 170 - -
Vra3g1053 393 SMART sant 13 63 IPR001005 -
Vra3g1053 393 SMART sant 66 114 IPR001005 -
Vra3g1053 393 MobiDBLite consensus disorder prediction 122 170 - -
Vra3g1053 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1053 Vra-Chr3 10643392 10645951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1053 1 211 MYB Transcription Factor Family AT5G60890 47.867 5.68e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g1053 Myb_DNA-binding 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1053 K09422 - pvu:PHAVU_010G079300g 586.645